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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="gmap" version="2013-05-09">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url" target_filename="gmap-2013-05-09.tar.gz">http://research-pub.gene.com/gmap/src/gmap-gsnap-2013-05-09.tar.gz</action>
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7 <action type="shell_command"> ./configure --prefix=`pwd` --with-gmapdb=$INSTALL_DIR/gmapdb</action>
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8 <action type="shell_command">make</action>
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9 <action type="shell_command">make install</action>
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10 <action type="move_directory_files">
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11 <source_directory>bin</source_directory>
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12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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13 </action>
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14 <action type="set_environment">
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15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 </readme>
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21 </package>
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22 </tool_dependency>
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