Mercurial > repos > jjohnson > eggnog_mapper

annotate tool-data/eggnog_mapper.loc.sample @ 1:7de7487a7e8d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
author jjohnson
date Tue, 08 Aug 2017 12:40:56 -0400
parents b3ae16ffb54e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b3ae16ffb54e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper
jjohnson
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that enables tools
b3ae16ffb54e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper
jjohnson
parents:
diff changeset
2 #to use a directory of eggnog_mapper data files.
b3ae16ffb54e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper
jjohnson
parents:
diff changeset
3 #
1
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
4 # eggnog-mapper requires the following files to be installed in the data directory:
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
5 # https://github.com/jhcepas/eggnog-mapper/blob/master/data/og2level.tsv.gz
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
6 # http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/eggnog.db.gz
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
7 # http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/OG_fasta.tar.gz
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
8 # In addition individual HMM DBs can be installed from:
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
9 # http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/hmmdb_levels/
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
10 # A complete diamond database is available from:
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
11 # http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/eggnog_proteins.dmnd.gz
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
12 #
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
13 #
0
b3ae16ffb54e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper
jjohnson
parents:
diff changeset
14 #name value type data_dir
b3ae16ffb54e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper
jjohnson
parents:
diff changeset
15 #eggnog_4.5 eggnog_4.5 data /depot/data2/galaxy/eggnog/eggnog_4.5/data
1
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
16 #eggnog_4.5arcNOG arcNOG hmmer eggnog_4.5
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
17 #eggnog_4.5euk euk hmmer eggnog_4.5
7de7487a7e8d planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 666539d2f4b2c8f8367f1bc3786f14a45dc639f6-dirty
jjohnson
parents: 0
diff changeset
18 #eggnog_4.5dmnd eggnog_proteins.dmnd diamond eggnog_4.5