Mercurial > repos > iuc > vcontact2
view test-data/proteins.fasta @ 0:51aaa210d1ee draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/vcontact2 commit 7bf2bea944495d304eeb2df687b9e1a046fb8026
| author | iuc |
|---|---|
| date | Wed, 04 Feb 2026 14:31:41 +0000 |
| parents | |
| children |
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>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_1 # 92 # 853 # 1 # ID=6982_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 MSKLLVLCCLLAVFLSPSDARCLPAPPEMLPVIEKMEPIFKKGNHAASEKAAQKLLTEQT SAQGKAACLIYIAELRLKQGNVKGAYDALDEMDTLTPDAPMAIFTRMQVMAHDGKADEGL GICRKAARRQPKEIRDELEAGCRTTAAKSRTVTPKKLFSEFDSNEVAAEDAYKDKLLTVS GKVSRIGTSVLGSPEITFLVDGSGIASVVCEFSKDARAQIAKLKKGQNVRVAGICRGMTL NAMVRVTGCWLAE* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_2 # 854 # 1366 # 1 # ID=6982_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.682 MLVKIAPFALCLLLAFPAFAAAPLQGKVVSVSDGDTITVLAPDKRQIRVRLYGIDCPERG QPYGARARQATADAVMGKDVGIRPIDTDRYGRTVALVSAPGREMLNGWLVRTGMAWVYPQ FCKRADICDRLRELEREARESKAGLWADKEPAPPWVWRKARKARSAGHLP* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_3 # 1412 # 1903 # -1 # ID=6982_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.632 MTAIPPEGPATGFLTTAQAAEKLGLKKVSVRAAIGAGRMRAVKAGRDWLISPADLAAFAA RAETRGRKKKEETMLFAIDLRRGRNLVEHERFGTPREAAECWQKHRLGVTWERSEPTMTL TASYRNRIFLRHRFGADADDMDFVPADHPGLEDAFVDGAVNHP* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_1 # 85 # 345 # -1 # ID=7927_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.533 MNTVKEHTTSDSFERHIRNMASMLAEGDAHFLIGAVIAPSGIKPVTFTRNISDGTREDLT KTTPPLVMRLILDHLQDFQDYMGTTQ* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_2 # 400 # 927 # -1 # ID=7927_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.614 MSRIKPATTAPVLKSLEDVDSALAQIAAQRRQIALIETDMNETIDTVKANAAAEAEPFKV EIAGLEQALARYAEYNRAELFARRKSCELTFGAFGFRASTKLKLLAKMTWARVLQNIHDW NRPELIRVKEEPDKEVMKRLSDQELKELGCKVVQEDVFFYELAEQELGQETGDAA* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_3 # 914 # 1141 # -1 # ID=7927_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.592 MNVFEEPGAIGYFVRLVKAMRKAQTDWFAKKDTDTLRRVRELTRRVDAFILDFETKTQQR QPSLLPKKEKINEPD* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_4 # 1144 # 2301 # -1 # ID=7927_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.651 MKTILRQCGFSQRRLAAELGISAAAVNRLVNGGLWPVNGAERLREKLIQILAGQGVCSFP PEAAPEALEALAALPPILKKSTSQEDKMLRKQALLPRTRQFFKIHGDPFGGECRSADDVY LDDNTRYVREAIYMTAKHGGMLAVVGESGSGKSTLRRDFLDRVKRESLPIVAIEPYVIAM DDDRRGKPLRADHIAEAVIYTLAPTQRAPRSQEGRYRLLHKVLKESARAGNRHVLVIEEA HDLHGQTLKHLKRFFELEDGFDRLLSIVLFGQTELKAKLGETNAEVREVVQRMELVELHP MNAPEGYLRHRLERAGLDFDKLFAADAVDALRLKHSGPAPRERGQAREAVSLLYPLAVGN TLAAAFNLAAELGLPRVSGDIIRRV* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_5 # 2298 # 4064 # -1 # ID=7927_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.667 RDRLYAAPRGERRAMIEDAARILGATPQTVYRKLAAHGYRPGRKRRADKGQTCVDRDTAL LACGMVVKATRANGKRTMPLAGAVKILEHSGMGCKINADTGEVTMPAPATVARVAKRYGC HPEQLGRGKPPVELASPHPNWCWQVDASVCVLFYLPGGKMGVRPIDDRQVYKNKPHNEDA IKDKRVIRWVVTDHYSGAFFLRYSTGAEDSLHLLDALFEAMCRRDDSENDCLYGVPRILV ADKGSSVTSGHARAAFDALGVRLVTHKPGNPRAKGQVEQAQNLVETQFEGRLRMYEVTDL PSLNAAADQWRVAYNLGAKHTRHGRTRHAMWRAIREDQLRIPASMEALRDLAHSGPARAT VTHKLTIVRTLRGYGRQEYDVRDIPGILPKMDVSLQVNPFRAPCVDMTLEDAEGNRRTWT LEPIKRDEAGFRVGAALIGEEYKALADTAADTALKDIHLRAHKAETLAEAEKAEAGKARI YADIDPMADVRAVPLRQYMPKRGRDLTLAPTLKETPPLSFVDAVFELRNRAKALGLEWTE GHVTALQKYHGPDDSIPAAKIASLLAVVLDEAAAERASGMRLVSGGAA* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_1 # 2 # 331 # 1 # ID=8160_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.621 AAMSKIDVILTAVLHTDKGALQPGETASLEERQAKRLAALGMVKLPGMVKLPGKAAKNGA ERGRVKAAKKAAGKSLEKAAEASPEEGVLKDDAGLNADEGDGNVEKTHT* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_2 # 309 # 905 # 1 # ID=8160_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 MSKKLTHEDIAAAAESLGLEPCAVKAVVEVESGGSGFLPEPDGRVKILFEGHVFFRELSK RNINPKPYALQSPDIVYPAWDRSRYKGGAAEWERLNAAALIHAEAALCSASYGLFQIMGF NHAVCGFADVRAFVDAQKESEAKQLESFCAFMRSQGLVSFLSGKDWAGFARRYNGAGYAQ NRYDVKLQKAYEQCRATS* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_3 # 1152 # 1430 # 1 # ID=8160_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.649 MRRSRLGICLLLPMMLGGCSAKPLTRVETAFLAPPAALLADCPETPIPAGGSNGDLLEAA RMLRIDLAECNRSKARLREWAEAVKLTGENHD* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_4 # 1423 # 1944 # 1 # ID=8160_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.588 MIDHITEWAREISAWAWIKAVAAGGVTFALELVGYPESAFLWLVCLMLADFALGFSRAWK TDSISSRKLRKGAYKFIFCWVSVALLVFVDRAIGVAFKTDYMPYELQDFYIAYLCIGEFF SCAGHLAFFGVRFPASFIRKLERYRMRIEGGPVRDGELTGEKEDGNPERTDIP* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_1 # 8 # 1075 # -1 # ID=8709_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.681 MPVVFLAYKKRPWIVKYREPWSGRPRRRSFMEEGEAREFERGQSDLYAREREIIRRARRG RAVKTPGAVCVADLLARYLATLANPTTRATSGYHVRLFAAIYGQRKAHCLTPDDVAGYLS VQQGRGVGLSTVYRRLRVVRAAYNWASRWGVLPVNPLAGLRLPTVAAQVPMPPSLQEARL LYAHAAPHVRRVIVLGITCGARIGPSELFRLQWRDVDTRQGLIRMPNAQKGSRLEYRDIP LRADTLRLVRKWAEQDAAAACPWVIHHKGKPVRTISRAWHNTKRRAGITRKLRPYDLRHA FASIALDHNADIKSVAEVMGHRNQVMILQYYRHTSAKQRRKAVNAAPSLGVDTED* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_2 # 1139 # 1666 # -1 # ID=8709_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.682 MATTMYVYDLITGELLYTRPAQVVGGKEITESASATPVAPPADTPAGHTVRWTGAAWETV EDHRQKTDEHGPKQGTKQGGTPFWLPGDTHASPARYVEELGPLPEGAMLEVPAMTPEEIA ERRKGEIMGRLSAIDAASIRPLRAAADGSATEFDVNKLAALDAEAAELRAELATL* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_3 # 1716 # 2006 # 1 # ID=8709_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.570 MVDSNARCQFDFFDGRKPLRAWVQGLSRVAGSWQEGAIKNITGSLGAIGLASRLSGAFYA TSESASDAGSGYTRYMTYMDISRVVQTAAENRPPNVA >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_1 # 2 # 184 # -1 # ID=4990_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 MSADQRGRRTPVQVLSIDPGSTESAYCLMDDKYKPLEIGKVSNYELLNVIDTYKYSILAV E >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_2 # 181 # 693 # -1 # ID=4990_2;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.526 MTKTALTHTCELAIHSHMTCKLGVYSAAEVSMDGDTWSSTRTRFGIVDYITLEQHGDSPE CTVRCFEIKVSPQDFKSDSALTWVGDYNYFVVPEPIYEKIAADIPDGIGCYVVFLNPTEL LRYSPFGVRCAKKAKRMQRKLEADYIKERMFRALSRDFEKLMRIREVWTA* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_3 # 690 # 806 # -1 # ID=4990_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.564 MTLSAISIFSGISIVATRSMAVPVVEWIARRIMEVEAT* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_4 # 803 # 1288 # -1 # ID=4990_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.564 VDKPVLDVCCGGKMFWFDHNDPRALYMDKFPRSHTLCDGRLFECAPDVVGDYTAMPFADE SFYMVVFDPPHSRKALPSSYLSQKYGTLPPSFIEDFRAAFSECMRVLRPGGTLIFKWSEI EVPISRIAEVFPCEPLFGVKTPRRTGTHFYVFIKDLPEVCA* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_1 # 1 # 189 # -1 # ID=2911_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 MRVLSIDPGSTESAYCLMDDKYKPLEIGKVSNYELLNVIDTYKYSILAVEMVASYGMPVG AEV >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_2 # 177 # 299 # -1 # ID=2911_2;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 MTKTALTHTCELAIHSHMTVKLGVYAAAEVSMDGDTPCES* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_3 # 296 # 418 # -1 # ID=2911_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.602 MTTRAISIFSGIESWSVATRCMAVPVVEWIARRIMEVEAT* >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_4 # 415 # 498 # -1 # ID=2911_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.512 FLDGVKYLQAKEAELCMPTLFDVAVGA*
