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comparison test-data/proteins.fasta @ 0:51aaa210d1ee draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/vcontact2 commit 7bf2bea944495d304eeb2df687b9e1a046fb8026
author iuc
date Wed, 04 Feb 2026 14:31:41 +0000
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-1:000000000000 0:51aaa210d1ee
1 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_1 # 92 # 853 # 1 # ID=6982_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 MSKLLVLCCLLAVFLSPSDARCLPAPPEMLPVIEKMEPIFKKGNHAASEKAAQKLLTEQT
2 SAQGKAACLIYIAELRLKQGNVKGAYDALDEMDTLTPDAPMAIFTRMQVMAHDGKADEGL
3 GICRKAARRQPKEIRDELEAGCRTTAAKSRTVTPKKLFSEFDSNEVAAEDAYKDKLLTVS
4 GKVSRIGTSVLGSPEITFLVDGSGIASVVCEFSKDARAQIAKLKKGQNVRVAGICRGMTL
5 NAMVRVTGCWLAE*
6 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_2 # 854 # 1366 # 1 # ID=6982_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.682
7 MLVKIAPFALCLLLAFPAFAAAPLQGKVVSVSDGDTITVLAPDKRQIRVRLYGIDCPERG
8 QPYGARARQATADAVMGKDVGIRPIDTDRYGRTVALVSAPGREMLNGWLVRTGMAWVYPQ
9 FCKRADICDRLRELEREARESKAGLWADKEPAPPWVWRKARKARSAGHLP*
10 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_3 # 1412 # 1903 # -1 # ID=6982_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.632
11 MTAIPPEGPATGFLTTAQAAEKLGLKKVSVRAAIGAGRMRAVKAGRDWLISPADLAAFAA
12 RAETRGRKKKEETMLFAIDLRRGRNLVEHERFGTPREAAECWQKHRLGVTWERSEPTMTL
13 TASYRNRIFLRHRFGADADDMDFVPADHPGLEDAFVDGAVNHP*
14 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_1 # 85 # 345 # -1 # ID=7927_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.533
15 MNTVKEHTTSDSFERHIRNMASMLAEGDAHFLIGAVIAPSGIKPVTFTRNISDGTREDLT
16 KTTPPLVMRLILDHLQDFQDYMGTTQ*
17 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_2 # 400 # 927 # -1 # ID=7927_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.614
18 MSRIKPATTAPVLKSLEDVDSALAQIAAQRRQIALIETDMNETIDTVKANAAAEAEPFKV
19 EIAGLEQALARYAEYNRAELFARRKSCELTFGAFGFRASTKLKLLAKMTWARVLQNIHDW
20 NRPELIRVKEEPDKEVMKRLSDQELKELGCKVVQEDVFFYELAEQELGQETGDAA*
21 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_3 # 914 # 1141 # -1 # ID=7927_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.592
22 MNVFEEPGAIGYFVRLVKAMRKAQTDWFAKKDTDTLRRVRELTRRVDAFILDFETKTQQR
23 QPSLLPKKEKINEPD*
24 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_4 # 1144 # 2301 # -1 # ID=7927_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.651
25 MKTILRQCGFSQRRLAAELGISAAAVNRLVNGGLWPVNGAERLREKLIQILAGQGVCSFP
26 PEAAPEALEALAALPPILKKSTSQEDKMLRKQALLPRTRQFFKIHGDPFGGECRSADDVY
27 LDDNTRYVREAIYMTAKHGGMLAVVGESGSGKSTLRRDFLDRVKRESLPIVAIEPYVIAM
28 DDDRRGKPLRADHIAEAVIYTLAPTQRAPRSQEGRYRLLHKVLKESARAGNRHVLVIEEA
29 HDLHGQTLKHLKRFFELEDGFDRLLSIVLFGQTELKAKLGETNAEVREVVQRMELVELHP
30 MNAPEGYLRHRLERAGLDFDKLFAADAVDALRLKHSGPAPRERGQAREAVSLLYPLAVGN
31 TLAAAFNLAAELGLPRVSGDIIRRV*
32 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_5 # 2298 # 4064 # -1 # ID=7927_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.667
33 RDRLYAAPRGERRAMIEDAARILGATPQTVYRKLAAHGYRPGRKRRADKGQTCVDRDTAL
34 LACGMVVKATRANGKRTMPLAGAVKILEHSGMGCKINADTGEVTMPAPATVARVAKRYGC
35 HPEQLGRGKPPVELASPHPNWCWQVDASVCVLFYLPGGKMGVRPIDDRQVYKNKPHNEDA
36 IKDKRVIRWVVTDHYSGAFFLRYSTGAEDSLHLLDALFEAMCRRDDSENDCLYGVPRILV
37 ADKGSSVTSGHARAAFDALGVRLVTHKPGNPRAKGQVEQAQNLVETQFEGRLRMYEVTDL
38 PSLNAAADQWRVAYNLGAKHTRHGRTRHAMWRAIREDQLRIPASMEALRDLAHSGPARAT
39 VTHKLTIVRTLRGYGRQEYDVRDIPGILPKMDVSLQVNPFRAPCVDMTLEDAEGNRRTWT
40 LEPIKRDEAGFRVGAALIGEEYKALADTAADTALKDIHLRAHKAETLAEAEKAEAGKARI
41 YADIDPMADVRAVPLRQYMPKRGRDLTLAPTLKETPPLSFVDAVFELRNRAKALGLEWTE
42 GHVTALQKYHGPDDSIPAAKIASLLAVVLDEAAAERASGMRLVSGGAA*
43 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_1 # 2 # 331 # 1 # ID=8160_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.621
44 AAMSKIDVILTAVLHTDKGALQPGETASLEERQAKRLAALGMVKLPGMVKLPGKAAKNGA
45 ERGRVKAAKKAAGKSLEKAAEASPEEGVLKDDAGLNADEGDGNVEKTHT*
46 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_2 # 309 # 905 # 1 # ID=8160_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593
47 MSKKLTHEDIAAAAESLGLEPCAVKAVVEVESGGSGFLPEPDGRVKILFEGHVFFRELSK
48 RNINPKPYALQSPDIVYPAWDRSRYKGGAAEWERLNAAALIHAEAALCSASYGLFQIMGF
49 NHAVCGFADVRAFVDAQKESEAKQLESFCAFMRSQGLVSFLSGKDWAGFARRYNGAGYAQ
50 NRYDVKLQKAYEQCRATS*
51 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_3 # 1152 # 1430 # 1 # ID=8160_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.649
52 MRRSRLGICLLLPMMLGGCSAKPLTRVETAFLAPPAALLADCPETPIPAGGSNGDLLEAA
53 RMLRIDLAECNRSKARLREWAEAVKLTGENHD*
54 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_4 # 1423 # 1944 # 1 # ID=8160_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.588
55 MIDHITEWAREISAWAWIKAVAAGGVTFALELVGYPESAFLWLVCLMLADFALGFSRAWK
56 TDSISSRKLRKGAYKFIFCWVSVALLVFVDRAIGVAFKTDYMPYELQDFYIAYLCIGEFF
57 SCAGHLAFFGVRFPASFIRKLERYRMRIEGGPVRDGELTGEKEDGNPERTDIP*
58 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_1 # 8 # 1075 # -1 # ID=8709_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.681
59 MPVVFLAYKKRPWIVKYREPWSGRPRRRSFMEEGEAREFERGQSDLYAREREIIRRARRG
60 RAVKTPGAVCVADLLARYLATLANPTTRATSGYHVRLFAAIYGQRKAHCLTPDDVAGYLS
61 VQQGRGVGLSTVYRRLRVVRAAYNWASRWGVLPVNPLAGLRLPTVAAQVPMPPSLQEARL
62 LYAHAAPHVRRVIVLGITCGARIGPSELFRLQWRDVDTRQGLIRMPNAQKGSRLEYRDIP
63 LRADTLRLVRKWAEQDAAAACPWVIHHKGKPVRTISRAWHNTKRRAGITRKLRPYDLRHA
64 FASIALDHNADIKSVAEVMGHRNQVMILQYYRHTSAKQRRKAVNAAPSLGVDTED*
65 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_2 # 1139 # 1666 # -1 # ID=8709_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.682
66 MATTMYVYDLITGELLYTRPAQVVGGKEITESASATPVAPPADTPAGHTVRWTGAAWETV
67 EDHRQKTDEHGPKQGTKQGGTPFWLPGDTHASPARYVEELGPLPEGAMLEVPAMTPEEIA
68 ERRKGEIMGRLSAIDAASIRPLRAAADGSATEFDVNKLAALDAEAAELRAELATL*
69 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_3 # 1716 # 2006 # 1 # ID=8709_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.570
70 MVDSNARCQFDFFDGRKPLRAWVQGLSRVAGSWQEGAIKNITGSLGAIGLASRLSGAFYA
71 TSESASDAGSGYTRYMTYMDISRVVQTAAENRPPNVA
72 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_1 # 2 # 184 # -1 # ID=4990_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508
73 MSADQRGRRTPVQVLSIDPGSTESAYCLMDDKYKPLEIGKVSNYELLNVIDTYKYSILAV
74 E
75 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_2 # 181 # 693 # -1 # ID=4990_2;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.526
76 MTKTALTHTCELAIHSHMTCKLGVYSAAEVSMDGDTWSSTRTRFGIVDYITLEQHGDSPE
77 CTVRCFEIKVSPQDFKSDSALTWVGDYNYFVVPEPIYEKIAADIPDGIGCYVVFLNPTEL
78 LRYSPFGVRCAKKAKRMQRKLEADYIKERMFRALSRDFEKLMRIREVWTA*
79 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_3 # 690 # 806 # -1 # ID=4990_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.564
80 MTLSAISIFSGISIVATRSMAVPVVEWIARRIMEVEAT*
81 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_4 # 803 # 1288 # -1 # ID=4990_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.564
82 VDKPVLDVCCGGKMFWFDHNDPRALYMDKFPRSHTLCDGRLFECAPDVVGDYTAMPFADE
83 SFYMVVFDPPHSRKALPSSYLSQKYGTLPPSFIEDFRAAFSECMRVLRPGGTLIFKWSEI
84 EVPISRIAEVFPCEPLFGVKTPRRTGTHFYVFIKDLPEVCA*
85 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_1 # 1 # 189 # -1 # ID=2911_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492
86 MRVLSIDPGSTESAYCLMDDKYKPLEIGKVSNYELLNVIDTYKYSILAVEMVASYGMPVG
87 AEV
88 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_2 # 177 # 299 # -1 # ID=2911_2;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569
89 MTKTALTHTCELAIHSHMTVKLGVYAAAEVSMDGDTPCES*
90 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_3 # 296 # 418 # -1 # ID=2911_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.602
91 MTTRAISIFSGIESWSVATRCMAVPVVEWIARRIMEVEAT*
92 >/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_4 # 415 # 498 # -1 # ID=2911_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.512
93 FLDGVKYLQAKEAELCMPTLFDVAVGA*