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diff test-data/proteins.fasta @ 0:51aaa210d1ee draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/vcontact2 commit 7bf2bea944495d304eeb2df687b9e1a046fb8026
author iuc
date Wed, 04 Feb 2026 14:31:41 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/proteins.fasta	Wed Feb 04 14:31:41 2026 +0000
@@ -0,0 +1,93 @@
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_1 # 92 # 853 # 1 # ID=6982_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 MSKLLVLCCLLAVFLSPSDARCLPAPPEMLPVIEKMEPIFKKGNHAASEKAAQKLLTEQT
+SAQGKAACLIYIAELRLKQGNVKGAYDALDEMDTLTPDAPMAIFTRMQVMAHDGKADEGL
+GICRKAARRQPKEIRDELEAGCRTTAAKSRTVTPKKLFSEFDSNEVAAEDAYKDKLLTVS
+GKVSRIGTSVLGSPEITFLVDGSGIASVVCEFSKDARAQIAKLKKGQNVRVAGICRGMTL
+NAMVRVTGCWLAE*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_2 # 854 # 1366 # 1 # ID=6982_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.682
+MLVKIAPFALCLLLAFPAFAAAPLQGKVVSVSDGDTITVLAPDKRQIRVRLYGIDCPERG
+QPYGARARQATADAVMGKDVGIRPIDTDRYGRTVALVSAPGREMLNGWLVRTGMAWVYPQ
+FCKRADICDRLRELEREARESKAGLWADKEPAPPWVWRKARKARSAGHLP*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_118614_3 # 1412 # 1903 # -1 # ID=6982_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.632
+MTAIPPEGPATGFLTTAQAAEKLGLKKVSVRAAIGAGRMRAVKAGRDWLISPADLAAFAA
+RAETRGRKKKEETMLFAIDLRRGRNLVEHERFGTPREAAECWQKHRLGVTWERSEPTMTL
+TASYRNRIFLRHRFGADADDMDFVPADHPGLEDAFVDGAVNHP*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_1 # 85 # 345 # -1 # ID=7927_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.533
+MNTVKEHTTSDSFERHIRNMASMLAEGDAHFLIGAVIAPSGIKPVTFTRNISDGTREDLT
+KTTPPLVMRLILDHLQDFQDYMGTTQ*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_2 # 400 # 927 # -1 # ID=7927_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.614
+MSRIKPATTAPVLKSLEDVDSALAQIAAQRRQIALIETDMNETIDTVKANAAAEAEPFKV
+EIAGLEQALARYAEYNRAELFARRKSCELTFGAFGFRASTKLKLLAKMTWARVLQNIHDW
+NRPELIRVKEEPDKEVMKRLSDQELKELGCKVVQEDVFFYELAEQELGQETGDAA*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_3 # 914 # 1141 # -1 # ID=7927_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.592
+MNVFEEPGAIGYFVRLVKAMRKAQTDWFAKKDTDTLRRVRELTRRVDAFILDFETKTQQR
+QPSLLPKKEKINEPD*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_4 # 1144 # 2301 # -1 # ID=7927_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.651
+MKTILRQCGFSQRRLAAELGISAAAVNRLVNGGLWPVNGAERLREKLIQILAGQGVCSFP
+PEAAPEALEALAALPPILKKSTSQEDKMLRKQALLPRTRQFFKIHGDPFGGECRSADDVY
+LDDNTRYVREAIYMTAKHGGMLAVVGESGSGKSTLRRDFLDRVKRESLPIVAIEPYVIAM
+DDDRRGKPLRADHIAEAVIYTLAPTQRAPRSQEGRYRLLHKVLKESARAGNRHVLVIEEA
+HDLHGQTLKHLKRFFELEDGFDRLLSIVLFGQTELKAKLGETNAEVREVVQRMELVELHP
+MNAPEGYLRHRLERAGLDFDKLFAADAVDALRLKHSGPAPRERGQAREAVSLLYPLAVGN
+TLAAAFNLAAELGLPRVSGDIIRRV*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_36312_5 # 2298 # 4064 # -1 # ID=7927_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.667
+RDRLYAAPRGERRAMIEDAARILGATPQTVYRKLAAHGYRPGRKRRADKGQTCVDRDTAL
+LACGMVVKATRANGKRTMPLAGAVKILEHSGMGCKINADTGEVTMPAPATVARVAKRYGC
+HPEQLGRGKPPVELASPHPNWCWQVDASVCVLFYLPGGKMGVRPIDDRQVYKNKPHNEDA
+IKDKRVIRWVVTDHYSGAFFLRYSTGAEDSLHLLDALFEAMCRRDDSENDCLYGVPRILV
+ADKGSSVTSGHARAAFDALGVRLVTHKPGNPRAKGQVEQAQNLVETQFEGRLRMYEVTDL
+PSLNAAADQWRVAYNLGAKHTRHGRTRHAMWRAIREDQLRIPASMEALRDLAHSGPARAT
+VTHKLTIVRTLRGYGRQEYDVRDIPGILPKMDVSLQVNPFRAPCVDMTLEDAEGNRRTWT
+LEPIKRDEAGFRVGAALIGEEYKALADTAADTALKDIHLRAHKAETLAEAEKAEAGKARI
+YADIDPMADVRAVPLRQYMPKRGRDLTLAPTLKETPPLSFVDAVFELRNRAKALGLEWTE
+GHVTALQKYHGPDDSIPAAKIASLLAVVLDEAAAERASGMRLVSGGAA*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_1 # 2 # 331 # 1 # ID=8160_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.621
+AAMSKIDVILTAVLHTDKGALQPGETASLEERQAKRLAALGMVKLPGMVKLPGKAAKNGA
+ERGRVKAAKKAAGKSLEKAAEASPEEGVLKDDAGLNADEGDGNVEKTHT*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_2 # 309 # 905 # 1 # ID=8160_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593
+MSKKLTHEDIAAAAESLGLEPCAVKAVVEVESGGSGFLPEPDGRVKILFEGHVFFRELSK
+RNINPKPYALQSPDIVYPAWDRSRYKGGAAEWERLNAAALIHAEAALCSASYGLFQIMGF
+NHAVCGFADVRAFVDAQKESEAKQLESFCAFMRSQGLVSFLSGKDWAGFARRYNGAGYAQ
+NRYDVKLQKAYEQCRATS*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_3 # 1152 # 1430 # 1 # ID=8160_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.649
+MRRSRLGICLLLPMMLGGCSAKPLTRVETAFLAPPAALLADCPETPIPAGGSNGDLLEAA
+RMLRIDLAECNRSKARLREWAEAVKLTGENHD*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_712050_4 # 1423 # 1944 # 1 # ID=8160_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.588
+MIDHITEWAREISAWAWIKAVAAGGVTFALELVGYPESAFLWLVCLMLADFALGFSRAWK
+TDSISSRKLRKGAYKFIFCWVSVALLVFVDRAIGVAFKTDYMPYELQDFYIAYLCIGEFF
+SCAGHLAFFGVRFPASFIRKLERYRMRIEGGPVRDGELTGEKEDGNPERTDIP*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_1 # 8 # 1075 # -1 # ID=8709_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.681
+MPVVFLAYKKRPWIVKYREPWSGRPRRRSFMEEGEAREFERGQSDLYAREREIIRRARRG
+RAVKTPGAVCVADLLARYLATLANPTTRATSGYHVRLFAAIYGQRKAHCLTPDDVAGYLS
+VQQGRGVGLSTVYRRLRVVRAAYNWASRWGVLPVNPLAGLRLPTVAAQVPMPPSLQEARL
+LYAHAAPHVRRVIVLGITCGARIGPSELFRLQWRDVDTRQGLIRMPNAQKGSRLEYRDIP
+LRADTLRLVRKWAEQDAAAACPWVIHHKGKPVRTISRAWHNTKRRAGITRKLRPYDLRHA
+FASIALDHNADIKSVAEVMGHRNQVMILQYYRHTSAKQRRKAVNAAPSLGVDTED*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_2 # 1139 # 1666 # -1 # ID=8709_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.682
+MATTMYVYDLITGELLYTRPAQVVGGKEITESASATPVAPPADTPAGHTVRWTGAAWETV
+EDHRQKTDEHGPKQGTKQGGTPFWLPGDTHASPARYVEELGPLPEGAMLEVPAMTPEEIA
+ERRKGEIMGRLSAIDAASIRPLRAAADGSATEFDVNKLAALDAEAAELRAELATL*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_152067_3 # 1716 # 2006 # 1 # ID=8709_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.570
+MVDSNARCQFDFFDGRKPLRAWVQGLSRVAGSWQEGAIKNITGSLGAIGLASRLSGAFYA
+TSESASDAGSGYTRYMTYMDISRVVQTAAENRPPNVA
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_1 # 2 # 184 # -1 # ID=4990_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508
+MSADQRGRRTPVQVLSIDPGSTESAYCLMDDKYKPLEIGKVSNYELLNVIDTYKYSILAV
+E
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_2 # 181 # 693 # -1 # ID=4990_2;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.526
+MTKTALTHTCELAIHSHMTCKLGVYSAAEVSMDGDTWSSTRTRFGIVDYITLEQHGDSPE
+CTVRCFEIKVSPQDFKSDSALTWVGDYNYFVVPEPIYEKIAADIPDGIGCYVVFLNPTEL
+LRYSPFGVRCAKKAKRMQRKLEADYIKERMFRALSRDFEKLMRIREVWTA*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_3 # 690 # 806 # -1 # ID=4990_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.564
+MTLSAISIFSGISIVATRSMAVPVVEWIARRIMEVEAT*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_198141||full_4 # 803 # 1288 # -1 # ID=4990_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.564
+VDKPVLDVCCGGKMFWFDHNDPRALYMDKFPRSHTLCDGRLFECAPDVVGDYTAMPFADE
+SFYMVVFDPPHSRKALPSSYLSQKYGTLPPSFIEDFRAAFSECMRVLRPGGTLIFKWSEI
+EVPISRIAEVFPCEPLFGVKTPRRTGTHFYVFIKDLPEVCA*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_1 # 1 # 189 # -1 # ID=2911_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492
+MRVLSIDPGSTESAYCLMDDKYKPLEIGKVSNYELLNVIDTYKYSILAVEMVASYGMPVG
+AEV
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_2 # 177 # 299 # -1 # ID=2911_2;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569
+MTKTALTHTCELAIHSHMTVKLGVYAAAEVSMDGDTPCES*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_3 # 296 # 418 # -1 # ID=2911_3;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.602
+MTTRAISIFSGIESWSVATRCMAVPVVEWIARRIMEVEAT*
+>/data/dnb12/galaxy_db/files/b/c/6/dataset_bc64941c-1633-489e-99c6-ba1905acc86b.dat_23878||full_4 # 415 # 498 # -1 # ID=2911_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.512
+FLDGVKYLQAKEAELCMPTLFDVAVGA*