Mercurial > repos > iuc > suite_mothur

changeset 2:b515a6a5801f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit e2075caee2ecdc6aed15a356e5328c5ca09cfb13
author iuc
date Thu, 08 Jun 2017 16:03:38 -0400
parents e12d889cc905
children 2f19b368cafd
files repository_dependencies.xml
diffstat 1 files changed, 110 insertions(+), 110 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Fri May 19 05:28:55 2017 -0400
+++ b/repository_dependencies.xml	Thu Jun 08 16:03:38 2017 -0400
@@ -1,128 +1,128 @@
 <?xml version="1.0"?>
-<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="a757a43025c9" name="mothur_rarefaction_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="844a4a7c3782" name="mothur_lefse" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b18cfd3a14a6" name="mothur_chimera_perseus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a16c10c1c418" name="mothur_tree_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0bb0ddd83eff" name="mothur_collect_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fb0eb9393fa8" name="mothur_consensus_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f1c8a12f90be" name="mothur_make_lookup" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b741add68934" name="mothur_chimera_uchime" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c6461f53ded3" name="mothur_bin_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="48c4a9ef85e6" name="mothur_shhh_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="cb4e005b8e8d" name="mothur_count_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9f28030ac5c5" name="mothur_get_dists" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c212b5d35bfe" name="mothur_cluster" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1cf5a6a5eb05" name="mothur_make_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7e334883931c" name="mothur_degap_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0de60716c635" name="mothur_get_lineage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6c8a25657db2" name="mothur_metastats" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3e6a5012b639" name="mothur_collect_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b0f422397f42" name="mothur_chop_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c51b7f1f7972" name="mothur_classify_tree" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="525400c8be71" name="mothur_primer_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4f5ecd0c94b3" name="mothur_phylotype" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="61b2c4a74b35" name="mothur_make_fastq" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b6f8dacd95cb" name="mothur_remove_otus" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a83120484b45" name="mothur_shhh_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   <repository changeset_revision="08136b194843" name="mothur_remove_dists" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a896b3a73d69" name="mothur_homova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="55a2429c5407" name="mothur_heatmap_bin" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7bf14224cf79" name="mothur_deunique_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="72f9b9aca28d" name="mothur_cooccurrence" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="00df9f248874" name="mothur_normalize_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0eae3db4c7a5" name="mothur_make_biom" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="dfbcf186c775" name="mothur_amova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c0deb61bbd3c" name="mothur_summary_tax" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="897ba33ecbdb" name="mothur_filter_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="033b821e30e1" name="mothur_parse_list" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c927518943fc" name="mothur_get_communitytype" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   <repository changeset_revision="840ac4688cf5" name="mothur_make_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="59ab81a8d28d" name="mothur_split_abund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="de8ecdb42c9c" name="mothur_dist_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b0f422397f42" name="mothur_chop_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c6f0d24c9cfe" name="mothur_summary_qual" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1db0331b2861" name="mothur_pcoa" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="83cf3f511e72" name="mothur_get_label" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="32a19ce534d1" name="mothur_sffinfo" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="72f9b9aca28d" name="mothur_cooccurrence" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9bdf0bca01c3" name="mothur_rarefaction_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a92e6daa48d6" name="mothur_summary_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="08692ab7170c" name="mothur_trim_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4c752399b0c7" name="mothur_heatmap_sim" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="55a2429c5407" name="mothur_heatmap_bin" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="50874b7ffc15" name="mothur_remove_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="054074503e50" name="mothur_trim_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="13a947a26f7a" name="mothur_count_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c1290bca9dca" name="mothur_phylo_diversity" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="258d04c1c5f8" name="mothur_pca" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7c45c65f957b" name="mothur_classify_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="566e0fba8f4b" name="mothur_dist_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="3e8a2864059a" name="mothur_get_otulist" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   <repository changeset_revision="225b9e8ba32d" name="mothur_classify_otu" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2fed4f809b76" name="mothur_make_sra" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f1c8a12f90be" name="mothur_make_lookup" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="00df9f248874" name="mothur_normalize_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="eedf2aef456a" name="mothur_clearcut" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c6f0d24c9cfe" name="mothur_summary_qual" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   <repository changeset_revision="f8dbdd8fb4bf" name="mothur_cluster_classic" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0de60716c635" name="mothur_get_lineage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c51b7f1f7972" name="mothur_classify_tree" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="24279ccecac5" name="mothur_reverse_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a83120484b45" name="mothur_shhh_flows" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8e771931d548" name="mothur_merge_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4f382764768a" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6352c9aa5116" name="mothur_remove_rare" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="87747f00c377" name="mothur_remove_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="99da0c9c070c" name="mothur_merge_taxsummary" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2af26863e7ca" name="mothur_nmds" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1a4ad79bc1cd" name="mothur_summary_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="122c47c8dad6" name="mothur_create_database" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="17b63c3cc04d" name="mothur_get_oturep" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d987556613a1" name="mothur_list_otulabels" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="583954d9f36e" name="mothur_get_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9f5b6a16f187" name="mothur_classify_rf" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1e6a7d59a872" name="mothur_get_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a419cbb82e13" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c32dad34e5ec" name="mothur_remove_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="cb917d37d403" name="mothur_make_lefse" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   <repository changeset_revision="2de7963eb3ba" name="mothur_make_contigs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="48c4a9ef85e6" name="mothur_shhh_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ad97e20535c7" name="mothur_chimera_bellerophon" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a896b3a73d69" name="mothur_homova" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a8d6c0935377" name="mothur_unique_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   <repository changeset_revision="ce8cfbd1c81c" name="mothur_chimera_check" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5f23107faaa8" name="mothur_make_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7e334883931c" name="mothur_degap_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="bd8b854bdb00" name="mothur_get_rabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="525400c8be71" name="mothur_primer_design" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e2c0462c683d" name="mothur_merge_files" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6352c9aa5116" name="mothur_remove_rare" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1cf5a6a5eb05" name="mothur_make_group" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4f382764768a" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0bb0ddd83eff" name="mothur_collect_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7c45c65f957b" name="mothur_classify_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="bfd4e6980f44" name="mothur_cluster_split" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8e7e91f0471e" name="mothur_otu_association" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="95175e14cc16" name="mothur_indicator" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="01f7becdf418" name="mothur_parsimony" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="793a04ad1837" name="mothur_get_mimarkspackage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="87bee516388b" name="mothur_split_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4baa2c0c53e2" name="mothur_mantel" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="af8e6f1110b3" name="mothur_get_coremicrobiome" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6495d62d9eb4" name="mothur_get_relabund" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b4939bc52ca7" name="mothur_remove_lineage" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="aad21e59489e" name="mothur_deunique_tree" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="24279ccecac5" name="mothur_reverse_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8fc365d239a2" name="mothur_list_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f18e9f139d14" name="mothur_sub_sample" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="1db0331b2861" name="mothur_pcoa" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0ef1f460a44f" name="mothur_pcr_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9900cd702dcf" name="mothur_sort_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a757a43025c9" name="mothur_rarefaction_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="35e4be39c33d" name="mothur_make_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="16083fc07186" name="mothur_align_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6fac1f9ee1be" name="mothur_cluster_fragments" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6cbf02389345" name="mothur_sens_spec" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a8c49429b013" name="mothur_anosim" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="83cf3f511e72" name="mothur_get_label" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="03bc0aa0f9d2" name="mothur_summary_seqs" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   <repository changeset_revision="ca67593968a3" name="mothur_chimera_ccode" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="c32dad34e5ec" name="mothur_remove_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a419cbb82e13" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="bfd4e6980f44" name="mothur_cluster_split" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a16c10c1c418" name="mothur_tree_shared" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b281cc5f8e01" name="mothur_chimera_pintail" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="3e6a5012b639" name="mothur_collect_single" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="87bee516388b" name="mothur_split_groups" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="17b63c3cc04d" name="mothur_get_oturep" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6c8a25657db2" name="mothur_metastats" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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