Mercurial > repos > iuc > package_seqtk_1_0_r75

comparison tool_dependencies.xml @ 0:f059064a6de2 draft default tip

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author iuc
date Wed, 18 Feb 2015 10:52:48 -0500
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="seqtk" version="1.0-r75-dirty">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">git clone https://github.com/lh3/seqtk/ seqtk</action>
7 <action type="shell_command">git reset --hard 08b3625c2a7aae3eca9ab056e1adea52ec22cbef</action>
8 <action type="shell_command">make</action>
9 <action type="move_file">
10 <source>seqtk</source>
11 <destination>$INSTALL_DIR/bin</destination>
12 </action>
13 <action type="set_environment">
14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>
19 Seqtk is a fast and lightweight tool for processing sequences in the FASTA or
20 FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be
21 optionally compressed by gzip.
22 </readme>
23 </package>
24 </tool_dependency>