Mercurial > repos > iuc > package_seqtk_1_0_r75

annotate tool_dependencies.xml @ 0:f059064a6de2 draft default tip

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author iuc
date Wed, 18 Feb 2015 10:52:48 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="seqtk" version="1.0-r75-dirty">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">git clone https://github.com/lh3/seqtk/ seqtk</action>
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7 <action type="shell_command">git reset --hard 08b3625c2a7aae3eca9ab056e1adea52ec22cbef</action>
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8 <action type="shell_command">make</action>
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9 <action type="move_file">
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10 <source>seqtk</source>
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11 <destination>$INSTALL_DIR/bin</destination>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 Seqtk is a fast and lightweight tool for processing sequences in the FASTA or
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20 FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be
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21 optionally compressed by gzip.
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22 </readme>
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23 </package>
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24 </tool_dependency>