Mercurial > repos > iuc > package_scipy_0_14

annotate tool_dependencies.xml @ 5:8494a6718d89 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scipy_0_14 commit 0d7fcf576fd797327af90538b216473ef13daa41
author iuc
date Sat, 23 May 2015 22:56:25 -0400
parents 888bb18d333b
children 01f0415771cf
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="atlas" version="3.10.2">
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4 <repository changeset_revision="4778b172b895" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="numpy" version="1.9">
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7 <repository changeset_revision="43cb426cb05d" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="scipy" version="0.14">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">https://pypi.python.org/packages/source/s/scipy/scipy-0.14.0.tar.gz#md5=d7c7f4ccf8b07b08d6fe49d5cd51f85d</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="4778b172b895" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="atlas" version="3.10.2" />
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16 </repository>
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17 <repository changeset_revision="43cb426cb05d" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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18 <package name="numpy" version="1.9" />
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19 </repository>
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20 </action>
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21 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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22 <action type="shell_command">
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23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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24 export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
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25 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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26 </action>
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27 <action type="set_environment">
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28 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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30 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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31 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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32 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR/lib/python</environment_variable>
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33 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
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34 </action>
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35 </actions>
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36 </install>
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37 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
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38 </package>
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39 </tool_dependency>