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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scipy_0_14 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:39:58 -0500
parents 01f0415771cf
children
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<?xml version="1.0"?>
<tool_dependency>
        <package name="atlas" version="3.10.2">
            <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
        </package>
        <package name="numpy" version="1.9">
            <repository changeset_revision="fc6f5ca8aef3" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
        </package>
        <package name="scipy" version="0.14">
            <install version="1.0">
                <actions>
                    <action type="download_by_url">https://pypi.python.org/packages/source/s/scipy/scipy-0.14.0.tar.gz#md5#d7c7f4ccf8b07b08d6fe49d5cd51f85d</action>
                    <action type="set_environment_for_install">
                        <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="atlas" version="3.10.2" />
                        </repository>
                        <repository changeset_revision="fc6f5ca8aef3" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="numpy" version="1.9" />
                        </repository>
                    </action>
                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
                    <action type="shell_command">
                        export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
                        export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
                        python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                    </action>
                    <action type="set_environment">
                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
                        <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
                        <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
                        </action>
                </actions>
            </install>
            <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
        </package>
</tool_dependency>