Mercurial > repos > iuc > package_scikit_learn_0_13
annotate tool_dependencies.xml @ 22:7669f0e12181 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 19:38:51 -0500 |
| parents | ff966cf935dd |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="numpy" version="1.7.1"> | |
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eab709b4fbbd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
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changeset
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4 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 <package name="scipy" version="0.12.0"> | |
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ff966cf935dd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit c5b99dd9482d52035bbfec5ac717f60ef968e989-dirty
iuc
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7 <repository changeset_revision="63808602082c" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 8 </package> |
| 9 <package name="matplotlib" version="1.2.1"> | |
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7669f0e12181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
21
diff
changeset
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10 <repository changeset_revision="8df10d8dc7f5" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 11 </package> |
| 12 <package name="scikit_learn" version="0.13.1"> | |
| 13 <install version="1.0"> | |
| 14 <actions> | |
| 15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> | |
| 16 <action type="set_environment_for_install"> | |
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7669f0e12181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
21
diff
changeset
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17 <repository changeset_revision="b5caa0c1be7b" name="package_lapack_3_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 18 <package name="lapack" version="3.4.2" /> |
| 19 </repository> | |
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eab709b4fbbd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
19
diff
changeset
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20 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 21 <package name="numpy" version="1.7.1" /> |
| 22 </repository> | |
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ff966cf935dd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit c5b99dd9482d52035bbfec5ac717f60ef968e989-dirty
iuc
parents:
20
diff
changeset
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23 <repository changeset_revision="63808602082c" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 24 <package name="scipy" version="0.12.0" /> |
| 25 </repository> | |
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7669f0e12181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
21
diff
changeset
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26 <repository changeset_revision="8df10d8dc7f5" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 27 <package name="matplotlib" version="1.2.1" /> |
| 28 </repository> | |
| 29 </action> | |
| 30 | |
| 31 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 1 | 32 <action language="cheetah" type="template_command"> |
| 5 | 33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && |
| 0 | 34 |
| 5 | 35 export PATH=\$PATH:$env.PATH_NUMPY && |
| 1 | 36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && |
| 37 | |
| 38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python | |
| 39 </action> | |
| 0 | 40 <action type="set_environment"> |
| 3 | 41 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 0 | 42 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 3 | 43 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |
| 0 | 44 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> |
| 3 | 45 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> |
| 0 | 46 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> |
| 3 | 47 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> |
| 0 | 48 |
| 49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> | |
| 50 </action> | |
| 51 </actions> | |
| 52 </install> | |
| 2 | 53 <readme> |
| 5 | 54 Compiling scikit-learn requires a C compiler (typically gcc). |
| 2 | 55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. |
| 5 | 56 |
| 2 | 57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies |
| 58 </readme> | |
| 0 | 59 </package> |
| 60 </tool_dependency> |