diff tool_dependencies.xml @ 5:b8f0a50d2d21 draft

Uploaded
author iuc
date Wed, 18 Feb 2015 11:35:52 -0500
parents 3518eaa660fe
children 92b799e859ff
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Aug 10 03:34:36 2014 -0400
+++ b/tool_dependencies.xml	Wed Feb 18 11:35:52 2015 -0500
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
         <package name="numpy" version="1.7.1">
-            <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+            <repository changeset_revision="6a7842f2f960" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
         </package>
         <package name="scipy" version="0.12.0">
-            <repository changeset_revision="a983dc7c8103" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+            <repository changeset_revision="75bed484c53c" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
         </package>
         <package name="matplotlib" version="1.2.1">
             <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -17,10 +17,10 @@
                         <repository changeset_revision="73854db866e7" name="package_lapack_3_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="lapack" version="3.4.2" />
                         </repository>
-                        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="6a7842f2f960" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="numpy" version="1.7.1" />
                         </repository>
-                        <repository changeset_revision="a983dc7c8103" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="75bed484c53c" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="scipy" version="0.12.0" />
                         </repository>
                         <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
@@ -30,9 +30,9 @@
 
                     <action type="make_directory">$INSTALL_DIR/lib/python</action>
                     <action language="cheetah" type="template_command">
-                    export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp; 
+                    export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
 
-                    export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp; 
+                    export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp;
                     export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp;
 
                     python setup.py install --install-lib $env.INSTALL_DIR/lib/python
@@ -51,9 +51,9 @@
                 </actions>
             </install>
             <readme>
-            Compiling scikit-learn requires a C compiler (typically gcc). 
+            Compiling scikit-learn requires a C compiler (typically gcc).
             The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
-            
+
             Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
             </readme>
         </package>