Mercurial > repos > iuc > package_scikit_learn_0_13
diff tool_dependencies.xml @ 1:84b82d4df8b8 draft
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 12 Sep 2013 07:19:26 -0400 |
| parents | a05da181571f |
| children | 4779579ef7e2 |
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--- a/tool_dependencies.xml Mon Jul 08 10:21:14 2013 -0400 +++ b/tool_dependencies.xml Thu Sep 12 07:19:26 2013 -0400 @@ -1,19 +1,19 @@ <?xml version="1.0"?> <tool_dependency> <package name="lapack" version="3.4.2"> - <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="60957bd68fe2" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="atlas" version="3.10.1"> - <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="3508de0ebae1" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="numpy" version="1.7.1"> - <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="b7ff4a8c58df" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="scipy" version="0.12.0"> - <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="8ed7d7b6907a" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="matplotlib" version="1.2.1"> - <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="scikit_learn" version="0.13.1"> @@ -21,32 +21,40 @@ <actions> <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="3508de0ebae1" name="package_atlas_3_10" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="atlas" version="3.10.1" /> </repository> - <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="60957bd68fe2" name="package_lapack_3_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="lapack" version="3.4.2" /> </repository> - <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="b7ff4a8c58df" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="numpy" version="1.7.1" /> </repository> - <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="8ed7d7b6907a" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="scipy" version="0.12.0" /> </repository> - <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="matplotlib" version="1.2.1" /> </repository> </action> <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && - export BLAS=$LAPACK_LIB_DIR/libblas.a && - export LAPACK=$LAPACK_LIB_DIR/liblapack.a && - export ATLAS=$ATLAS_LIB_DIR/libatlas.a && - export PATH=$PATH:$PATH_NUMPY && - export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_SCIPY:$PYTHONPATH_MATPLOTLIB && + <action language="cheetah" type="template_command"> + export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && - python setup.py install --home $INSTALL_DIR</action> + #if env.get('ATLAS_LIB_DIR', False): + export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a && + #end if + #if env.get('LAPACK_LIB_DIR', False): + export BLAS=$env.LAPACK_LIB_DIR/libblas.a && + export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a && + #end if + + export PATH=\$PATH:$env.PATH_NUMPY && + export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && + + python setup.py install --install-lib $env.INSTALL_DIR/lib/python + </action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>