Mercurial > repos > iuc > package_python_2_7_scipy_0_14

annotate tool_dependencies.xml @ 19:7002d3382856 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
author iuc
date Thu, 17 Sep 2015 16:17:46 -0400
parents 145ba5a36683
children 10a6799b6a27
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8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="atlas" version="3.10.2">
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7002d3382856 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
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4 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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5 </package>
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6 <package name="numpy" version="1.9">
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7 <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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8 </package>
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9 <package name="python" version="2.7.10">
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10 <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="scipy" version="0.14">
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13 <install version="1.0">
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14 <actions>
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15 <action type="setup_python_environment">
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16 <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
7002d3382856 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
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17 <package name="python" version="2.7.10" />
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18 </repository>
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19 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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20 <package name="atlas" version="3.10.2" />
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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21 </repository>
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22 <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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23 <package name="numpy" version="1.9" />
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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24 </repository>
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25 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
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26 <package md5sum="1bfedd3197b3e3f8cd131ae2c06a1bf5">https://pypi.python.org/packages/source/s/scipy/scipy-0.14.1.tar.gz</package>
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27 </action>
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28 <action type="set_environment">
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29 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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31 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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32 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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33 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
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34 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
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35 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR</environment_variable>
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36 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
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37 <environment_variable action="set_to" name="SCIPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
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38 </action>
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39 </actions>
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40 </install>
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41 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
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42 </package>
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43 </tool_dependency>