Mercurial > repos > iuc > package_python_2_7_scipy_0_14

annotate tool_dependencies.xml @ 4:b6904bdb14c4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
author iuc
date Sun, 17 May 2015 16:41:25 -0400
parents b24af010d80a
children 1ea3738165f5
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="atlas" version="3.10.2">
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4 <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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5 </package>
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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6 <package name="numpy" version="1.9">
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7 <repository changeset_revision="67d8bb2369e2" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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8 </package>
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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9 <package name="python" version="2.7">
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10 <repository changeset_revision="55bebb0e06ec" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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12 <package name="scipy" version="0.14">
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13 <install version="1.0">
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14 <actions>
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15 <action type="setup_python_environment">
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16 <repository changeset_revision="55bebb0e06ec" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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17 <package name="python" version="2.7" />
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18 </repository>
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19 <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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20 <package name="atlas" version="3.10.2" />
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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21 </repository>
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22 <repository changeset_revision="67d8bb2369e2" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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23 <package name="numpy" version="1.9" />
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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24 </repository>
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25 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
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26 <package>https://pypi.python.org/packages/source/s/scipy/scipy-0.14.1.tar.gz#md5=1bfedd3197b3e3f8cd131ae2c06a1bf5</package>
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27 </action>
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28 <action type="set_environment">
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29 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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31 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
8d22fd5a704c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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32 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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33 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
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34 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR/lib/python</environment_variable>
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35 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
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36 <environment_variable action="set_to" name="SCIPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
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37 </action>
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38 </actions>
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39 </install>
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40 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
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41 </package>
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42 </tool_dependency>