Mercurial > repos > iuc > package_python_2_7_pyprophet_0_13_2
annotate tool_dependencies.xml @ 0:01bd1585febb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
| author | iuc |
|---|---|
| date | Sun, 17 May 2015 15:04:03 -0400 |
| parents | |
| children | a8f192b553b0 |
| rev | line source |
|---|---|
|
0
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
2 <tool_dependency> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
3 <package name="numpy" version="1.9"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
4 <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
5 </package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
6 <package name="pandas" version="0.16"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
7 <repository changeset_revision="77d09b678f3e" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
8 </package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
9 <package name="scipy" version="0.14"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
10 <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
11 </package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
12 <package name="scikit_learn" version="0.15"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
13 <repository changeset_revision="088ad9f80c9d" name="package_python_2_7_scikit_learn_0_15" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
14 </package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
15 <package name="python" version="2.7"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
16 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
17 </package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
18 <package name="pyprophet" version="0.13.2"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
19 <install version="1.0"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
20 <actions> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
21 <!-- populate the environment variables from the dependend repos --> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
22 <action type="set_environment_for_install"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
23 <repository changeset_revision="77d09b678f3e" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
24 <package name="pandas" version="0.16" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
25 </repository> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
26 <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
27 <package name="numpy" version="1.9" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
28 </repository> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
29 <repository changeset_revision="088ad9f80c9d" name="package_python_2_7_scikit_learn_0_15" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
30 <package name="scikit_learn" version="0.15" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
31 </repository> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
32 <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
33 <package name="scipy" version="0.14" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
34 </repository> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
35 </action> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
36 <action type="setup_python_environment"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
37 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
38 <package name="python" version="2.7" /> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
39 </repository> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
40 <!-- allow downloading and installing an Python package from https://pypi.org/ --> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
41 <package>https://pypi.python.org/packages/source/n/numexpr/numexpr-2.4.tar.gz</package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
42 <package>https://pypi.python.org/packages/source/p/pyprophet/pyprophet-0.13.3.tar.gz#md5=81d29bec7f2dfe0367274aab31d7c733</package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
43 </action> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
44 <action type="set_environment"> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
45 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
46 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
47 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
48 <environment_variable action="set_to" name="PYPROPHET_ROOT">$INSTALL_DIR</environment_variable> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
49 </action> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
50 </actions> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
51 </install> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
52 <readme>Compiling pyprophet requires a C compiler (typically gcc).</readme> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
53 </package> |
|
01bd1585febb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
iuc
parents:
diff
changeset
|
54 </tool_dependency> |
