Mercurial > repos > iuc > package_python_2_7_pyprophet_0_13_2
diff tool_dependencies.xml @ 0:01bd1585febb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pyprophet_0_13_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
| author | iuc |
|---|---|
| date | Sun, 17 May 2015 15:04:03 -0400 |
| parents | |
| children | a8f192b553b0 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sun May 17 15:04:03 2015 -0400 @@ -0,0 +1,54 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="numpy" version="1.9"> + <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="pandas" version="0.16"> + <repository changeset_revision="77d09b678f3e" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="scipy" version="0.14"> + <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="scikit_learn" version="0.15"> + <repository changeset_revision="088ad9f80c9d" name="package_python_2_7_scikit_learn_0_15" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="python" version="2.7"> + <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="pyprophet" version="0.13.2"> + <install version="1.0"> + <actions> + <!-- populate the environment variables from the dependend repos --> + <action type="set_environment_for_install"> + <repository changeset_revision="77d09b678f3e" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="pandas" version="0.16" /> + </repository> + <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="numpy" version="1.9" /> + </repository> + <repository changeset_revision="088ad9f80c9d" name="package_python_2_7_scikit_learn_0_15" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="scikit_learn" version="0.15" /> + </repository> + <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="scipy" version="0.14" /> + </repository> + </action> + <action type="setup_python_environment"> + <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="python" version="2.7" /> + </repository> + <!-- allow downloading and installing an Python package from https://pypi.org/ --> + <package>https://pypi.python.org/packages/source/n/numexpr/numexpr-2.4.tar.gz</package> + <package>https://pypi.python.org/packages/source/p/pyprophet/pyprophet-0.13.3.tar.gz#md5=81d29bec7f2dfe0367274aab31d7c733</package> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> + <environment_variable action="set_to" name="PYPROPHET_ROOT">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>Compiling pyprophet requires a C compiler (typically gcc).</readme> + </package> +</tool_dependency>