Mercurial > repos > iuc > package_nwalign_0_3_1
annotate tool_dependencies.xml @ 7:d6669652705a draft default tip
planemo upload for repository https://bitbucket.org/brentp/biostuff/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 19:25:51 -0500 |
| parents | 4227aa2ed5fe |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 1 | 3 <package name="numpy" version="1.9"> |
|
7
d6669652705a
planemo upload for repository https://bitbucket.org/brentp/biostuff/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
6
diff
changeset
|
4 <repository changeset_revision="fc6f5ca8aef3" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 1 | 5 </package> |
| 6 <package name="nwalign" version="0.3.1"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">https://pypi.python.org/packages/source/n/nwalign/nwalign-0.3.1.tar.gz</action> | |
| 10 | |
| 11 <action type="set_environment_for_install"> | |
|
7
d6669652705a
planemo upload for repository https://bitbucket.org/brentp/biostuff/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
6
diff
changeset
|
12 <repository changeset_revision="fc6f5ca8aef3" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 1 | 13 <package name="numpy" version="1.9" /> |
| 14 </repository> | |
| 15 </action> | |
| 16 | |
| 17 | |
| 18 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 19 <action type="shell_command"> | |
| 20 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | |
| 21 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin | |
| 22 </action> | |
| 23 <action type="set_environment"> | |
| 24 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 2 | 26 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |
| 27 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
| 1 | 28 <environment_variable action="set_to" name="NWALIGN_ROOT_PATH">$INSTALL_DIR</environment_variable> |
| 29 </action> | |
| 30 </actions> | |
| 31 </install> | |
| 32 <readme>Compiling nwalign requires a C compiler (typically gcc).</readme> | |
| 33 </package> | |
| 0 | 34 </tool_dependency> |