Mercurial > repos > iuc > package_nwalign_0_3_1

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planemo upload for repository https://bitbucket.org/brentp/biostuff/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:25:51 -0500
parents 4227aa2ed5fe
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<?xml version="1.0"?>
<tool_dependency>
    <package name="numpy" version="1.9">
       <repository changeset_revision="fc6f5ca8aef3" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="nwalign" version="0.3.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://pypi.python.org/packages/source/n/nwalign/nwalign-0.3.1.tar.gz</action>

                <action type="set_environment_for_install">
                    <repository changeset_revision="fc6f5ca8aef3" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                </action>


                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
                    <environment_variable action="set_to" name="NWALIGN_ROOT_PATH">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling nwalign requires a C compiler (typically gcc).</readme>
    </package>
</tool_dependency>