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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.9">
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4 <repository changeset_revision="dd91d64330d4" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="scipy" version="0.14">
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7 <repository changeset_revision="a257ce4d82ad" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <!--package name="rpy2" version="2.3.6">
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10 <repository name="package_rpy2_2_3_6" owner="bgruening" prior_installation_required="True" />
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11 </package-->
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12 <package name="python" version="2.7">
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13 <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="msproteomicstools" version="0.3.2">
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16 <install version="1.0">
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17 <actions>
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18 <!-- populate the environment variables from the dependend repos -->
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19 <action type="set_environment_for_install">
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20 <repository changeset_revision="21afd61aae1e" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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21 <package name="pandas" version="0.14" />
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22 </repository>
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23 <repository changeset_revision="dd91d64330d4" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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24 <package name="numpy" version="1.9" />
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25 </repository>
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26 <!--repository name="package_rpy2_2_3_6" owner="bgruening">
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27 <package name="rpy2" version="2.3.6" />
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28 </repository>-->
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29 <repository changeset_revision="a257ce4d82ad" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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30 <package name="scipy" version="0.14" />
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31 </repository>
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32 </action>
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33 <action type="setup_python_environment">
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34 <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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35 <package name="python" version="2.7" />
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36 </repository>
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37 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
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38 <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package>
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39 <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package>
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40 <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.6.6.tar.gz</package>
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41 <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package>
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42 <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package>
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43 <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.2.2.tar.gz</package>
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44 <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package>
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45 </action>
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46 <action type="set_environment">
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47 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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48 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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49 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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50 <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT">$INSTALL_DIR</environment_variable>
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51 </action>
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52 </actions>
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53 </install>
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54 <readme>Installing msproteomicstools.</readme>
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55 </package>
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56 </tool_dependency>
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