Mercurial > repos > iuc > package_msproteomicstools_0_3_2

comparison tool_dependencies.xml @ 0:4cc9f2bf0ee8 draft

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author iuc
date Fri, 06 Feb 2015 18:50:26 -0500
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children 6dce308c9366
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-1:000000000000 0:4cc9f2bf0ee8
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.9">
4 <repository changeset_revision="dd91d64330d4" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="scipy" version="0.14">
7 <repository changeset_revision="a257ce4d82ad" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <!--package name="rpy2" version="2.3.6">
10 <repository name="package_rpy2_2_3_6" owner="bgruening" prior_installation_required="True" />
11 </package-->
12 <package name="python" version="2.7">
13 <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="msproteomicstools" version="0.3.2">
16 <install version="1.0">
17 <actions>
18 <!-- populate the environment variables from the dependend repos -->
19 <action type="set_environment_for_install">
20 <repository changeset_revision="21afd61aae1e" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
21 <package name="pandas" version="0.14" />
22 </repository>
23 <repository changeset_revision="dd91d64330d4" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
24 <package name="numpy" version="1.9" />
25 </repository>
26 <!--repository name="package_rpy2_2_3_6" owner="bgruening">
27 <package name="rpy2" version="2.3.6" />
28 </repository>-->
29 <repository changeset_revision="a257ce4d82ad" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
30 <package name="scipy" version="0.14" />
31 </repository>
32 </action>
33 <action type="setup_python_environment">
34 <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="python" version="2.7" />
36 </repository>
37 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
38 <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package>
39 <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package>
40 <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.6.6.tar.gz</package>
41 <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package>
42 <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package>
43 <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.2.2.tar.gz</package>
44 <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package>
45 </action>
46 <action type="set_environment">
47 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
48 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
49 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
50 <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT">$INSTALL_DIR</environment_variable>
51 </action>
52 </actions>
53 </install>
54 <readme>Installing msproteomicstools.</readme>
55 </package>
56 </tool_dependency>