Mercurial > repos > iuc > package_khmer_2_0

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:20:34 -0500
parents 49b5183ca337
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bz2file" version="0.98">
        <repository changeset_revision="f504007348bb" name="package_bz2file_0_98" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="screed" version="0.9">
        <repository changeset_revision="b35a64ef1cde" name="package_screed_0_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="setuptools" version="19.0">
        <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="khmer" version="2.0">
        <install version="1.0">
            <actions>
                <action md5sum="1f610abd021254e21b082179a100cd39" type="download_by_url">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="setuptools" version="19.0" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>