Mercurial > repos > iuc > package_khmer_2_0

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:20:34 -0500
parents 49b5183ca337
children
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be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
iuc
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1 <?xml version="1.0"?>
be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
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2 <tool_dependency>
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3 <package name="bz2file" version="0.98">
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
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4 <repository changeset_revision="f504007348bb" name="package_bz2file_0_98" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
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5 </package>
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
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6 <package name="screed" version="0.9">
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49b5183ca337 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 6eaf4336ff90294e503dedf930ccbe31f8b4efe9
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7 <repository changeset_revision="b35a64ef1cde" name="package_screed_0_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
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9 <package name="setuptools" version="19.0">
45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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10 <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
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11 </package>
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be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
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12 <package name="khmer" version="2.0">
be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
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13 <install version="1.0">
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1390fb5ca781 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 72078bced0c08685219c6e80e42ce07458822391-dirty
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14 <actions>
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15 <action md5sum="1f610abd021254e21b082179a100cd39" type="download_by_url">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</action>
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45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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16 <action type="set_environment_for_install">
45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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17 <repository changeset_revision="c0a6821af233" name="package_setuptools_19_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
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18 <package name="setuptools" version="19.0" />
45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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19 </repository>
45919aef3a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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20 </action>
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80f3e4a906b1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24-dirty
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21 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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22 <action type="shell_command">
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23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
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24 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
parents: 3
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25 </action>
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
parents: 3
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26 <action type="set_environment">
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
parents: 3
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27 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
30fef72bb5ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit be26d5871e25cedbc642669993e64439715c7a24
iuc
parents: 3
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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29 </action>
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be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
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30 </actions>
be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
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31 </install>
be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
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32 </package>
be6719477611 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 30d9d9738d4957c6a8c70d475711eafe9d601142-dirty
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33 </tool_dependency>