Mercurial > repos > iuc > package_htseq_0_6
annotate tool_dependencies.xml @ 13:602f736e719c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_htseq_0_6 commit 936ca4b4641eae2bdfa93885f35f5a9263f9dae1
| author | iuc |
|---|---|
| date | Fri, 22 May 2015 22:43:32 -0400 |
| parents | 6e4f168963da |
| children | 4973158e8046 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="numpy" version="1.7.1"> | |
| 6 | 4 <repository changeset_revision="11099cc214d5" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 <package name="matplotlib" version="1.2.1"> | |
|
13
602f736e719c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_htseq_0_6 commit 936ca4b4641eae2bdfa93885f35f5a9263f9dae1
iuc
parents:
12
diff
changeset
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7 <repository changeset_revision="f8425a8b9a38" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 8 </package> |
| 9 <package name="htseq" version="0.6.1"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> | |
| 13 | |
| 14 <action type="set_environment_for_install"> | |
| 6 | 15 <repository changeset_revision="11099cc214d5" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 16 <package name="numpy" version="1.7.1" /> |
| 17 </repository> | |
|
13
602f736e719c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_htseq_0_6 commit 936ca4b4641eae2bdfa93885f35f5a9263f9dae1
iuc
parents:
12
diff
changeset
|
18 <repository changeset_revision="f8425a8b9a38" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 19 <package name="matplotlib" version="1.2.1" /> |
| 20 </repository> | |
| 21 </action> | |
| 22 | |
| 23 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 24 <action type="shell_command"> | |
| 4 | 25 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
| 0 | 26 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> |
| 27 <action type="set_environment"> | |
| 28 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 3 | 30 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |
| 31 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
| 32 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> | |
| 0 | 33 <environment_variable action="set_to" name="HTSEQ_ROOT_PATH">$INSTALL_DIR</environment_variable> |
| 34 </action> | |
| 35 </actions> | |
| 36 </install> | |
| 37 <readme> | |
| 38 Installation of htseq. The installation can be accessed via HTSEQ_ROOT_PATH. | |
| 39 https://pypi.python.org/pypi/HTSeq | |
| 40 </readme> | |
| 41 </package> | |
| 42 </tool_dependency> |