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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.7.1">
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4 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="matplotlib" version="1.2.1">
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7 <repository changeset_revision="85b7ddf90888" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="htseq" version="0.6.1">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action>
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13
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14 <action type="set_environment_for_install">
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15 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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16 <package name="numpy" version="1.7.1" />
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17 </repository>
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18 <repository changeset_revision="85b7ddf90888" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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19 <package name="matplotlib" version="1.2.1" />
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20 </repository>
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21 </action>
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22
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23 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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24 <action type="shell_command">
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25 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
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26 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
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27 <action type="set_environment">
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28 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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30 <environment_variable action="set_to" name="HTSEQ_ROOT_PATH">$INSTALL_DIR</environment_variable>
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31 </action>
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32 </actions>
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33 </install>
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34 <readme>
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35 Installation of htseq. The installation can be accessed via HTSEQ_ROOT_PATH.
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36 https://pypi.python.org/pypi/HTSeq
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37 </readme>
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38 </package>
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39 </tool_dependency>
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