Mercurial > repos > iuc > package_graphclust_0_7_6

view tool_dependencies.xml @ 0:0881edd7f341 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Mon, 06 Apr 2015 17:11:32 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="blast_plus_2_2_26" version="2.2.6">
        <repository changeset_revision="ebde5fa60194" name="package_blast_plus_2_2_26" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

    <package name="infernal_1_1rc4" version="1.1">
        <repository changeset_revision="bdf8789c423c" name="package_infernal_1_1rc4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

    <package name="viennaRNA" version="1.8.5">
        <action type="download_file">http://www.tbi.univie.ac.at/~ronny/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
        <action type="shell_command">
            mkdir $INSTALL_DIR/viennaRNA/ &amp;&amp;
            ./configure --prefix=$INSTALL_DIR/viennaRNA/
            make
            make install
        </action>
    </package>

    <package name="locarna" version="1.7.7.1">
        <action type="download_file">http://www.bioinf.uni-freiburg.de/Software/LocARNA/Releases/locarna-1.7.7.1.tar.gz</action>
        <action type="shell_command">
            mkdir build &amp;&amp;
            cd build &amp;&amp;
            mkdir $INSTALL_DIR/locarna/ &amp;&amp;
            ../configure --prefix=$INSTALL_DIR/locarna/ --with-vrna=$INSTALL_DIR/locarna/
            make
            make install
        </action>
    </package>

    <package name="rnashapes" version="2.1.6">
        <action type="download_file">http://bibiserv.techfak.uni-bielefeld.de/spool/download/bibiserv_1380821679_17785/RNAshapes-2.1.6.tar.gz</action>
        <action type="shell_command">
            mkdir build &amp;&amp;
            cd build &amp;&amp;
            mkdir $INSTALL_DIR/rnashapes/ &amp;&amp;
            ../configure --prefix=$INSTALL_DIR/rnashapes/
            make
            make install
        </action>
    </package>

    <package name="rnaz" version="2.1">
        <action type="download_file">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
        <action type="shell_command">
            mkdir $INSTALL_DIR/RNAz/ &amp;&amp;
            ./configure --prefix=$INSTALL_DIR/RNAz/
            make
            make install
        </action>
    </package>

</tool_dependency>