Mercurial > repos > iuc > package_graphclust_0_7_6

annotate tool_dependencies.xml @ 0:0881edd7f341 draft default tip

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author iuc
date Mon, 06 Apr 2015 17:11:32 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="blast_plus_2_2_26" version="2.2.6">
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4 <repository changeset_revision="ebde5fa60194" name="package_blast_plus_2_2_26" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6
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7 <package name="infernal_1_1rc4" version="1.1">
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8 <repository changeset_revision="bdf8789c423c" name="package_infernal_1_1rc4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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9 </package>
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10
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11 <package name="viennaRNA" version="1.8.5">
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12 <action type="download_file">http://www.tbi.univie.ac.at/~ronny/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
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13 <action type="shell_command">
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14 mkdir $INSTALL_DIR/viennaRNA/ &amp;&amp;
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15 ./configure --prefix=$INSTALL_DIR/viennaRNA/
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16 make
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17 make install
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18 </action>
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19 </package>
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20
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21 <package name="locarna" version="1.7.7.1">
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22 <action type="download_file">http://www.bioinf.uni-freiburg.de/Software/LocARNA/Releases/locarna-1.7.7.1.tar.gz</action>
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23 <action type="shell_command">
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24 mkdir build &amp;&amp;
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25 cd build &amp;&amp;
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26 mkdir $INSTALL_DIR/locarna/ &amp;&amp;
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27 ../configure --prefix=$INSTALL_DIR/locarna/ --with-vrna=$INSTALL_DIR/locarna/
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28 make
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29 make install
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30 </action>
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31 </package>
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32
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33 <package name="rnashapes" version="2.1.6">
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34 <action type="download_file">http://bibiserv.techfak.uni-bielefeld.de/spool/download/bibiserv_1380821679_17785/RNAshapes-2.1.6.tar.gz</action>
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35 <action type="shell_command">
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36 mkdir build &amp;&amp;
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37 cd build &amp;&amp;
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38 mkdir $INSTALL_DIR/rnashapes/ &amp;&amp;
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39 ../configure --prefix=$INSTALL_DIR/rnashapes/
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40 make
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41 make install
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42 </action>
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43 </package>
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44
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45 <package name="rnaz" version="2.1">
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46 <action type="download_file">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
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47 <action type="shell_command">
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48 mkdir $INSTALL_DIR/RNAz/ &amp;&amp;
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49 ./configure --prefix=$INSTALL_DIR/RNAz/
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50 make
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51 make install
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52 </action>
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53 </package>
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54
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55 </tool_dependency>