Mercurial > repos > iuc > package_graphclust_0_7_6

comparison tool_dependencies.xml @ 0:0881edd7f341 draft default tip

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author iuc
date Mon, 06 Apr 2015 17:11:32 -0400
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-1:000000000000 0:0881edd7f341
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="blast_plus_2_2_26" version="2.2.6">
4 <repository changeset_revision="ebde5fa60194" name="package_blast_plus_2_2_26" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="infernal_1_1rc4" version="1.1">
8 <repository changeset_revision="bdf8789c423c" name="package_infernal_1_1rc4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
9 </package>
10
11 <package name="viennaRNA" version="1.8.5">
12 <action type="download_file">http://www.tbi.univie.ac.at/~ronny/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
13 <action type="shell_command">
14 mkdir $INSTALL_DIR/viennaRNA/ &amp;&amp;
15 ./configure --prefix=$INSTALL_DIR/viennaRNA/
16 make
17 make install
18 </action>
19 </package>
20
21 <package name="locarna" version="1.7.7.1">
22 <action type="download_file">http://www.bioinf.uni-freiburg.de/Software/LocARNA/Releases/locarna-1.7.7.1.tar.gz</action>
23 <action type="shell_command">
24 mkdir build &amp;&amp;
25 cd build &amp;&amp;
26 mkdir $INSTALL_DIR/locarna/ &amp;&amp;
27 ../configure --prefix=$INSTALL_DIR/locarna/ --with-vrna=$INSTALL_DIR/locarna/
28 make
29 make install
30 </action>
31 </package>
32
33 <package name="rnashapes" version="2.1.6">
34 <action type="download_file">http://bibiserv.techfak.uni-bielefeld.de/spool/download/bibiserv_1380821679_17785/RNAshapes-2.1.6.tar.gz</action>
35 <action type="shell_command">
36 mkdir build &amp;&amp;
37 cd build &amp;&amp;
38 mkdir $INSTALL_DIR/rnashapes/ &amp;&amp;
39 ../configure --prefix=$INSTALL_DIR/rnashapes/
40 make
41 make install
42 </action>
43 </package>
44
45 <package name="rnaz" version="2.1">
46 <action type="download_file">http://www.tbi.univie.ac.at/~wash/RNAz/RNAz-2.1.tar.gz</action>
47 <action type="shell_command">
48 mkdir $INSTALL_DIR/RNAz/ &amp;&amp;
49 ./configure --prefix=$INSTALL_DIR/RNAz/
50 make
51 make install
52 </action>
53 </package>
54
55 </tool_dependency>