Mercurial > repos > iuc > package_genometools_1_5_7

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
author iuc
date Tue, 26 Jan 2016 14:53:28 -0500
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e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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1 <?xml version="1.0"?>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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2 <tool_dependency>
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3 <package name="genometools" version="1.5.7">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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4 <install version="1.0">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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5 <actions>
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921f8fbe4688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
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6 <action type="download_by_url" sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5">
921f8fbe4688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
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7 https://depot.galaxyproject.org/software/genometools/genometools_1.5.7_src_all.tar.gz
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e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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8 </action>
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921f8fbe4688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
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9 <action type="shell_command">make 64bit=yes cairo=no prefix=$INSTALL_DIR install</action>
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e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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921f8fbe4688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
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11 <action type="shell_command">cd gtpython &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
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e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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12 <action type="set_environment">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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13 <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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14 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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17 </action>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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18 </actions>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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19 </install>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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20 <readme>
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21 The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt.
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22 It is based on a C library named “libgenometools” which consists of several modules.
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e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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24 For more details, see:
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25 http://genometools.org/
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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26 </readme>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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27 </package>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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28 </tool_dependency>
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921f8fbe4688 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
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