Mercurial > repos > iuc > package_genometools_1_5_7

diff tool_dependencies.xml @ 1:921f8fbe4688 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
author iuc
date Tue, 26 Jan 2016 14:53:28 -0500
parents e89d0691dcda
children
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--- a/tool_dependencies.xml	Wed Dec 23 04:57:13 2015 -0500
+++ b/tool_dependencies.xml	Tue Jan 26 14:53:28 2016 -0500
@@ -1,21 +1,14 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="cairo" version="1.14.2">
-        <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
     <package name="genometools" version="1.5.7">
         <install version="1.0">
             <actions>
-                <action sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5" type="download_by_url">http://genometools.org/pub/genometools-1.5.7.tar.gz</action>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="cairo" version="1.12.14" />
-                    </repository>
+                <action type="download_by_url" sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5">
+                        https://depot.galaxyproject.org/software/genometools/genometools_1.5.7_src_all.tar.gz
                 </action>
-                <action type="make_install" />
-                
+                <action type="shell_command">make 64bit=yes cairo=no prefix=$INSTALL_DIR install</action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
+                <action type="shell_command">cd gtpython &amp;&amp;  python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
                 <action type="set_environment">
                     <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
@@ -25,7 +18,7 @@
             </actions>
         </install>
         <readme>
-The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. 
+The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt.
 It is based on a C library named “libgenometools” which consists of several modules.
 
 For more details, see:
@@ -33,3 +26,4 @@
         </readme>
     </package>
 </tool_dependency>
+