Mercurial > repos > iuc > package_genometools_1_5_7

annotate tool_dependencies.xml @ 0:e89d0691dcda draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
author iuc
date Wed, 23 Dec 2015 04:57:13 -0500
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e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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1 <?xml version="1.0"?>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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2 <tool_dependency>
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3 <package name="cairo" version="1.14.2">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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4 <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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5 </package>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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6 <package name="genometools" version="1.5.7">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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7 <install version="1.0">
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8 <actions>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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9 <action sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5" type="download_by_url">http://genometools.org/pub/genometools-1.5.7.tar.gz</action>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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10 <action type="set_environment_for_install">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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11 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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12 <package name="cairo" version="1.12.14" />
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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13 </repository>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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14 </action>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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15 <action type="make_install" />
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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16
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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17 <action type="make_directory">$INSTALL_DIR/lib/python</action>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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18 <action type="shell_command">python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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19 <action type="set_environment">
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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20 <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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21 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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22 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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24 </action>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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25 </actions>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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26 </install>
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27 <readme>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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28 The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt.
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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29 It is based on a C library named “libgenometools” which consists of several modules.
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30
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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31 For more details, see:
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32 http://genometools.org/
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33 </readme>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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34 </package>
e89d0691dcda planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
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35 </tool_dependency>