Mercurial > repos > iuc > package_gemini_0_18_1

annotate tool_dependencies.xml @ 1:4afa532941cb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit e88029bb12e5262687267293f9d2a694eb00d3f0-dirty
author iuc
date Tue, 29 Dec 2015 10:17:17 -0500
parents 31c030cae31b
children b90d6db50590
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31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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1 <?xml version="1.0"?>
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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2 <tool_dependency>
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3 <package name="zlib" version="1.2.8">
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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4 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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5 </package>
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4afa532941cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit e88029bb12e5262687267293f9d2a694eb00d3f0-dirty
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6 <package name="gemini" version="0.18.1">
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31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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7 <install version="1.0">
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8 <actions>
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9 <!-- first action is always downloading -->
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10 <action type="download_file">https://raw.githubusercontent.com/arq5x/gemini/edf6dbaff3664cabf3043d6eb4db3aa7788b1572/gemini/scripts/gemini_install.py</action>
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31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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12 <!-- populate the environment variables from the dependend repos -->
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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13 <action type="set_environment_for_install">
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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14 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="zlib" version="1.2.8" />
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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16 </repository>
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17 </action>
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31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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19 <action type="shell_command">
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20 export HOME=$INSTALL_DIR &amp;&amp; python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.0
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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21 </action>
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22
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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23 <action type="set_environment">
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24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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25 <environment_variable action="set_to" name="HOME">.</environment_variable>
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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26 </action>
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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27 </actions>
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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28 </install>
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29 <readme>Compiling GEMINI requires a recent c++ compiler, usually gcc.</readme>
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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30 </package>
31c030cae31b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
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31 </tool_dependency>