Mercurial > repos > iuc > package_gemini_0_18_1

diff tool_dependencies.xml @ 0:31c030cae31b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 3615ea978575271814069dd0d483ab003f39f7ef
author iuc
date Sun, 27 Dec 2015 17:27:44 -0500
parents
children 4afa532941cb
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun Dec 27 17:27:44 2015 -0500
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="zlib" version="1.2.8">
+        <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="gemini" version="0.18.0">
+        <install version="1.0">
+            <actions>
+                <!-- first action is always downloading -->
+                <action type="download_file">https://raw.githubusercontent.com/arq5x/gemini/v0.18.0/gemini/scripts/gemini_install.py</action>
+
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="zlib" version="1.2.8" />
+                    </repository>
+                </action>
+
+                <action type="shell_command">
+                    export HOME=$INSTALL_DIR &amp;&amp; python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.0
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/gemini/bin</environment_variable>
+                    <environment_variable action="set_to" name="HOME">.</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Compiling GEMINI requires a recent c++ compiler, usually gcc.</readme>
+    </package>
+</tool_dependency>