Mercurial > repos > iuc > package_fastx_toolkit_0_0_14

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastx_toolkit_0_0_14 commit 231157132a50f5bc8f9d0c8151c4ddca86c97213-dirty
author iuc
date Thu, 15 Sep 2016 07:56:40 -0400
parents f5725bc779f6
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="libgtextutils" version="0.7">
        <repository changeset_revision="805867efe06b" name="package_libgtextutils_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="fastx_toolkit" version="0.0.14">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="darwin">
                    <action sha256sum="9e1f00c4c9f286be59ac0e07ddb7504f3b6433c93c5c7941d6e3208306ff5806" type="download_by_url">https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2</action>
                    <action type="set_environment_for_install">
                        <repository changeset_revision="805867efe06b" name="package_libgtextutils_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="libgtextutils" version="0.7" />
                        </repository>
                    </action>
                    <action type="shell_command">
                    CXXFLAGS="${CXXFLAGS} -std=c++11 -stdlib=libc++" &amp;&amp;
                    ./configure --prefix=$INSTALL_DIR --disable-wall &amp;&amp; make &amp;&amp; make install </action>
                    <action type="set_environment">
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    </action>
                </actions>
                <actions>
                    <action sha256sum="9e1f00c4c9f286be59ac0e07ddb7504f3b6433c93c5c7941d6e3208306ff5806" type="download_by_url">https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2</action>
                    <action type="set_environment_for_install">
                        <repository changeset_revision="805867efe06b" name="package_libgtextutils_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="libgtextutils" version="0.7" />
                        </repository>
                    </action>
                    <action type="autoconf">--disable-wall</action>
                    <action type="set_environment">
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    </action>
                </actions>
            </actions_group>
        </install>
        <readme>
            The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
        </readme>
    </package>
</tool_dependency>