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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
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4 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="circos" version="0.67.5">
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7 <repository changeset_revision="2488e6ef69a8" name="package_circos_0_67_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="circostools" version="0.20">
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10 <install version="1.0">
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11 <actions>
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12 <action type="setup_perl_environment">
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13 <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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14 <package name="perl" version="5.18.1" />
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15 </repository>
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16 </action>
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17 <action type="download_by_url">http://mkweb.bcgsc.ca/dev/circos/distribution/circos-tools-0.20.tgz</action>
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18 <action type="move_directory_files">
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19 <source_directory>.</source_directory>
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20 <destination_directory>$INSTALL_DIR</destination_directory>
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21 </action>
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22 <action type="set_environment">
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23 <environment_variable action="set_to" name="CIRCOSTOOLS">$INSTALL_DIR</environment_variable>
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24 </action>
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25 </actions>
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26 </install>
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27 <readme>
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28 Circos Tools
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29 ============
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30
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31 Several, utility add-on scripts are available, such as for bundling links.
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32 These are not necessary for Circos, but helpful in carrying out common data
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33 reduction and analysis tasks. Tools are described in the Tools Tutorial.
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34 </readme>
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35 </package>
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36 </tool_dependency>
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