view tool_dependencies.xml @ 4:ed41baa6271e draft default tip

planemo upload commit 003144051b526e4491cb4adcfc86aa0d14964c54
author iuc
date Tue, 12 Jan 2016 05:55:32 -0500
parents c9392d893389
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="perl" version="5.18.1">
        <repository changeset_revision="6f144bd786a8" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="circos" version="0.67.5">
        <repository changeset_revision="76e18491a582" name="package_circos_0_67_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="circostools" version="0.20">
        <install version="1.0">
            <actions>
                <action type="setup_perl_environment">
                    <repository changeset_revision="6f144bd786a8" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="perl" version="5.18.1" />
                    </repository>
                </action>
                <action type="download_by_url">http://mkweb.bcgsc.ca/dev/circos/distribution/circos-tools-0.20.tgz</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="CIRCOSTOOLS">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Circos Tools
============

Several, utility add-on scripts are available, such as for bundling links.
These are not necessary for Circos, but helpful in carrying out common data
reduction and analysis tasks. Tools are described in the Tools Tutorial.
</readme>
    </package>
</tool_dependency>