Mercurial > repos > iuc > package_blast_plus_2_4_0

annotate tool_dependencies.xml @ 0:86bfd94cdfad draft

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planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
author peterjc
date Fri, 05 Aug 2016 09:28:48 -0400
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children ae08ca030c63
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86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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1 <?xml version='1.0' encoding='utf-8'?>
86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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2 <tool_dependency>
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3 <package name="blast+" version="2.4.0">
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4 <install version="1.0">
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5 <actions_group>
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6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
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7 <actions os="darwin" architecture="x86_64">
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8 <action type="download_by_url" sha256sum="0b248ba8b90d2e13ea5cb41066f71e08bd3e4a38eef0f14827a881aa82665f14">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-universal-macosx.tar.gz</action>
86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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9 <action type="move_directory_files">
86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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10 <source_directory>bin</source_directory>
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11 <destination_directory>$INSTALL_DIR</destination_directory>
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12 </action>
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13 </actions>
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14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
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15 <actions os="darwin" architecture="i386">
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16 <action type="download_by_url" sha256sum="0b248ba8b90d2e13ea5cb41066f71e08bd3e4a38eef0f14827a881aa82665f14">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-universal-macosx.tar.gz</action>
86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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17 <action type="move_directory_files">
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18 <source_directory>bin</source_directory>
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19 <destination_directory>$INSTALL_DIR</destination_directory>
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20 </action>
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21 </actions>
86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
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23 <actions os="linux" architecture="x86_64">
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24 <action type="download_by_url" sha256sum="21aa7ca60954ce9c6d3f572e427fee804291fcad41447d554033a81d5af96a2b">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-x64-linux.tar.gz</action>
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25 <action type="move_directory_files">
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26 <source_directory>bin</source_directory>
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27 <destination_directory>$INSTALL_DIR</destination_directory>
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28 </action>
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29 </actions>
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30 <actions>
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31 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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32 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
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33 <action type="shell_command">uname</action>
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34 <action type="shell_command">arch</action>
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35 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
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36 <action type="shell_command">false</action>
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37 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
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38 </actions>
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39 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
86bfd94cdfad planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
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40 <action type="set_environment">
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41 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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42 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
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43 </action>
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44 </actions_group>
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45 </install>
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46 <readme>
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47 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
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48 which is faster than performing a local compilation, avoids any issues with build
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49 dependencies, and is more reproducible between installations as there is no
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50 variability from the compiler or library versions.
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51
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52 Note that NCBI do not provide 32 bit Linux binaries anymore.
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53
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54 For more details, see:
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55 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
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56 </readme>
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57 </package>
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58 </tool_dependency>