Mercurial > repos > iuc > package_blast_plus_2_4_0

comparison tool_dependencies.xml @ 0:86bfd94cdfad draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/peterjc/galaxy_blast/ commit 6d0f068e952b7602d7da9ab42a8a59f424d9ded2
author peterjc
date Fri, 05 Aug 2016 09:28:48 -0400
parents
children ae08ca030c63
comparison
equal deleted inserted replaced
-1:000000000000 0:86bfd94cdfad
1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="blast+" version="2.4.0">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
7 <actions os="darwin" architecture="x86_64">
8 <action type="download_by_url" sha256sum="0b248ba8b90d2e13ea5cb41066f71e08bd3e4a38eef0f14827a881aa82665f14">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-universal-macosx.tar.gz</action>
9 <action type="move_directory_files">
10 <source_directory>bin</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action>
13 </actions>
14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
15 <actions os="darwin" architecture="i386">
16 <action type="download_by_url" sha256sum="0b248ba8b90d2e13ea5cb41066f71e08bd3e4a38eef0f14827a881aa82665f14">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-universal-macosx.tar.gz</action>
17 <action type="move_directory_files">
18 <source_directory>bin</source_directory>
19 <destination_directory>$INSTALL_DIR</destination_directory>
20 </action>
21 </actions>
22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
23 <actions os="linux" architecture="x86_64">
24 <action type="download_by_url" sha256sum="21aa7ca60954ce9c6d3f572e427fee804291fcad41447d554033a81d5af96a2b">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.4.0/ncbi-blast-2.4.0+-x64-linux.tar.gz</action>
25 <action type="move_directory_files">
26 <source_directory>bin</source_directory>
27 <destination_directory>$INSTALL_DIR</destination_directory>
28 </action>
29 </actions>
30 <actions>
31 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
32 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
33 <action type="shell_command">uname</action>
34 <action type="shell_command">arch</action>
35 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
36 <action type="shell_command">false</action>
37 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
38 </actions>
39 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
40 <action type="set_environment">
41 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
42 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
43 </action>
44 </actions_group>
45 </install>
46 <readme>
47 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
48 which is faster than performing a local compilation, avoids any issues with build
49 dependencies, and is more reproducible between installations as there is no
50 variability from the compiler or library versions.
51
52 Note that NCBI do not provide 32 bit Linux binaries anymore.
53
54 For more details, see:
55 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
56 </readme>
57 </package>
58 </tool_dependency>