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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:05:36 -0500
parents a7b91dd41a0c
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="boost" version="1.57">
        <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="sparsehash" version="2.0.2">
        <repository changeset_revision="e48d85b57acd" name="package_sparsehash_2_0_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="sqlite" version="3.8.3">
        <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="abyss" version="1.9.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/bcgsc/abyss/releases/download/1.9.0/abyss-1.9.0.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="boost" version="1.57" />
                    </repository>
                    <repository changeset_revision="e48d85b57acd" name="package_sparsehash_2_0_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="sparsehash" version="2.0.2" />
                    </repository>
                    <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="sqlite" version="3.8.3" />
                    </repository>
                </action>
                <action type="autoconf" />
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="ABYSS_ROOT_PATH">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>ABySS is a de novo sequence assembler intended for short paired-end reads and large genomes.</readme>
    </package>
</tool_dependency>