Mercurial > repos > iuc > package_abyss_1_9_0

annotate tool_dependencies.xml @ 3:7c561deacf72 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:05:36 -0500
parents a7b91dd41a0c
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09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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1 <?xml version="1.0"?>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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2 <tool_dependency>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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3 <package name="boost" version="1.57">
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7c561deacf72 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
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4 <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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5 </package>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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6 <package name="sparsehash" version="2.0.2">
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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7 <repository changeset_revision="e48d85b57acd" name="package_sparsehash_2_0_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
iuc
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8 </package>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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9 <package name="sqlite" version="3.8.3">
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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10 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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11 </package>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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12 <package name="abyss" version="1.9.0">
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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13 <install version="1.0">
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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14 <actions>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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15 <action type="download_by_url">https://github.com/bcgsc/abyss/releases/download/1.9.0/abyss-1.9.0.tar.gz</action>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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16 <action type="set_environment_for_install">
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7c561deacf72 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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17 <repository changeset_revision="bd65814f17c5" name="package_boost_1_57" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
0
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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18 <package name="boost" version="1.57" />
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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19 </repository>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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20 <repository changeset_revision="e48d85b57acd" name="package_sparsehash_2_0_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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21 <package name="sparsehash" version="2.0.2" />
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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22 </repository>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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23 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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24 <package name="sqlite" version="3.8.3" />
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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25 </repository>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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26 </action>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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27 <action type="autoconf" />
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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28 <action type="set_environment">
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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30 <environment_variable action="set_to" name="ABYSS_ROOT_PATH">$INSTALL_DIR</environment_variable>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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31 </action>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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32 </actions>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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33 </install>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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34 <readme>ABySS is a de novo sequence assembler intended for short paired-end reads and large genomes.</readme>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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35 </package>
09f111573a77 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
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36 </tool_dependency>