Mercurial > repos > iuc > ncbi_eutils_egquery

annotate egquery.xml @ 5:20a86bfb54eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:38:00 -0400
parents b4018986e21a
children 9e873de07e98
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1 <?xml version="1.0"?>
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2 <tool id="ncbi_eutils_egquery" name="NCBI EGQuery" version="@WRAPPER_VERSION@">
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3 <description>Provides the number of records retrieved in all Entrez databases by a single text query.</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <version_command>python egquery.py --version</version_command>
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9 <command detect_errors="aggressive" interpreter="python"><![CDATA[egquery.py
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10 "$term"
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12 @EMAIL_ARGUMENTS@
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13 > $default]]></command>
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14 <inputs>
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15 <expand macro="dbselect"/>
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16 <param label="Search Term" name="term" type="text">
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17 <sanitizer>
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18 <valid>
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19 <add value="'"/>
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20 <add value="["/>
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21 <add value="]"/>
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22 </valid>
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23 </sanitizer>
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24 </param>
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25 </inputs>
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26 <outputs>
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27 <data format="xml" name="default" label="EGQuery Results for $term"/>
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28 <expand macro="history_out">
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29 <filter>use_history</filter>
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30 </expand>
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31 </outputs>
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32 <tests>
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33 <test>
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34 <param name="term" value="bacteriophage"/>
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35 <output name="default" file="egquery.1.xml" compare="contains" ftype="xml"/>
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36 </test>
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37 </tests>
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38 <help><![CDATA[
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39 NCBI Entrez EGQuery
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40 ===================
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42 Provides the number of records retrieved in all Entrez databases by a single
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43 text query.
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45 Example Queries
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46 ---------------
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47
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48 +----------------------+-------------+
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49 | Parameter | Value |
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50 +======================+=============+
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51 | Term | Cancer |
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52 +----------------------+-------------+
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53
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54 @REFERENCES@
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56 @DISCLAIMER@
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57 ]]></help>
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58 <expand macro="citations"/>
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59 </tool>