Mercurial > repos > iuc > ncbi_eutils_egquery
diff egquery.xml @ 0:22fed2340d2b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
| author | iuc |
|---|---|
| date | Sat, 31 Oct 2015 12:45:31 -0400 |
| parents | |
| children | b4018986e21a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/egquery.xml Sat Oct 31 12:45:31 2015 -0400 @@ -0,0 +1,60 @@ +<?xml version="1.0"?> +<tool id="ncbi_eutils_egquery" name="NCBI EGQuery" version="@WRAPPER_VERSION@"> + <description>Provides the number of records retrieved in all Entrez databases by a single text query.</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="stdio"/> + <version_command>python egquery.py --version</version_command> + <command interpreter="python"><![CDATA[egquery.py +"$term" + +@EMAIL_ARGUMENTS@ +> $default]]></command> + <inputs> + <expand macro="dbselect"/> + <param label="Search Term" name="term" type="text"> + <sanitizer> + <valid> + <add value="'"/> + <add value="["/> + <add value="]"/> + </valid> + </sanitizer> + </param> + </inputs> + <outputs> + <data format="xml" name="default" label="EGQuery Results for $term"/> + <expand macro="history_out"> + <filter>use_history</filter> + </expand> + </outputs> + <tests> + <test> + <param name="term" value="bacteriophage"/> + <output name="default" file="egquery.1.xml" compare="sim_size"/> + </test> + </tests> + <help><![CDATA[ +NCBI Entrez EGQuery +=================== + +Provides the number of records retrieved in all Entrez databases by a single +text query. + +Example Queries +--------------- + ++----------------------+-------------+ +| Parameter | Value | ++======================+=============+ +| Term | Cancer | ++----------------------+-------------+ + +@REFERENCES@ + +@DISCLAIMER@ + ]]></help> + <expand macro="citations"/> +</tool>