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view test-data/test-constellations/definitions/cB.1.617.2.json @ 0:5e8505f27681 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
author iuc
date Tue, 08 Aug 2023 15:11:47 +0000
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{
    "label": "Delta (B.1.617.2-like)",
    "description": "Defining constellation for lineage B.1.617.2",
    "sources": [
        "https://github.com/cov-lineages/pango-designation/issues/49"
    ],
    "type": "variant",
    "variant": {
        "Pango_lineages": [
            "B.1.617.2",
            "AY.1",
            "AY.2"
        ],
	    "mrca_lineage": "B.1.617.2",
        "lineage_name": "B.1.617.2",
        "incompatible_lineage_calls": [
            "AY.1",
            "AY.2",
            "AY.4",
            "AY.4.2"
        ],
        "PHE_label": "VOC-21APR-02",
        "WHO_label": "Delta",
        "representative_genome": ""
    },
    "tags": [
        "B.1.617.2",
        "VOC-21APR-02",
        "Delta",
        "VUI-21APR-02"
    ],
    "sites": [
        "S:T19R",
	"S:G142D",
        "S:L452R",
        "S:T478K",
        "S:P681R",
        "S:D950N",
        "ORF3a:S26L",
        "M:I82T",
        "ORF7a:V82A",
        "ORF7a:T120I",
        "N:D63G",
        "N:R203M",
        "N:D377Y"
    ],
    "rules": {
        "min_alt": 5,
        "max_ref": 3
    }
}