Mercurial > repos > iuc > lineagespot

diff test-data/test-constellations/definitions/cB.1.617.2.json @ 0:5e8505f27681 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
author: iuc
date: Tue, 08 Aug 2023 15:11:47 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test-constellations/definitions/cB.1.617.2.json	Tue Aug 08 15:11:47 2023 +0000
@@ -0,0 +1,51 @@
+{
+    "label": "Delta (B.1.617.2-like)",
+    "description": "Defining constellation for lineage B.1.617.2",
+    "sources": [
+        "https://github.com/cov-lineages/pango-designation/issues/49"
+    ],
+    "type": "variant",
+    "variant": {
+        "Pango_lineages": [
+            "B.1.617.2",
+            "AY.1",
+            "AY.2"
+        ],
+	    "mrca_lineage": "B.1.617.2",
+        "lineage_name": "B.1.617.2",
+        "incompatible_lineage_calls": [
+            "AY.1",
+            "AY.2",
+            "AY.4",
+            "AY.4.2"
+        ],
+        "PHE_label": "VOC-21APR-02",
+        "WHO_label": "Delta",
+        "representative_genome": ""
+    },
+    "tags": [
+        "B.1.617.2",
+        "VOC-21APR-02",
+        "Delta",
+        "VUI-21APR-02"
+    ],
+    "sites": [
+        "S:T19R",
+	"S:G142D",
+        "S:L452R",
+        "S:T478K",
+        "S:P681R",
+        "S:D950N",
+        "ORF3a:S26L",
+        "M:I82T",
+        "ORF7a:V82A",
+        "ORF7a:T120I",
+        "N:D63G",
+        "N:R203M",
+        "N:D377Y"
+    ],
+    "rules": {
+        "min_alt": 5,
+        "max_ref": 3
+    }
+}