Mercurial > repos > iuc > lineagespot

annotate test-data/test-constellations/definitions/cB.1.617.2.json @ 0:5e8505f27681 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
author iuc
date Tue, 08 Aug 2023 15:11:47 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
1 {
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
2 "label": "Delta (B.1.617.2-like)",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
3 "description": "Defining constellation for lineage B.1.617.2",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
4 "sources": [
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
5 "https://github.com/cov-lineages/pango-designation/issues/49"
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
6 ],
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
7 "type": "variant",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
8 "variant": {
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
9 "Pango_lineages": [
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
10 "B.1.617.2",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
11 "AY.1",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
12 "AY.2"
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
13 ],
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
14 "mrca_lineage": "B.1.617.2",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
15 "lineage_name": "B.1.617.2",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
16 "incompatible_lineage_calls": [
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
17 "AY.1",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
18 "AY.2",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
19 "AY.4",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
20 "AY.4.2"
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
21 ],
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
22 "PHE_label": "VOC-21APR-02",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
23 "WHO_label": "Delta",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
24 "representative_genome": ""
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
25 },
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
26 "tags": [
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
27 "B.1.617.2",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
28 "VOC-21APR-02",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
29 "Delta",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
30 "VUI-21APR-02"
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
31 ],
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
32 "sites": [
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
33 "S:T19R",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
34 "S:G142D",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
35 "S:L452R",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
36 "S:T478K",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
37 "S:P681R",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
38 "S:D950N",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
39 "ORF3a:S26L",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
40 "M:I82T",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
41 "ORF7a:V82A",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
42 "ORF7a:T120I",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
43 "N:D63G",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
44 "N:R203M",
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
45 "N:D377Y"
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
46 ],
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
47 "rules": {
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
48 "min_alt": 5,
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
49 "max_ref": 3
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
50 }
5e8505f27681 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
iuc
parents:
diff changeset
51 }