Mercurial > repos > iuc > imagej2_create_image

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8ea6a4271431c05c82b09c0d3e629b13e6ea7936
author iuc
date Fri, 22 Jul 2016 23:12:05 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="imagej2_create_image" name="Create new image" version="@WRAPPER_VERSION@.0">
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3 <description></description>
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4 <macros>
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5 <import>imagej2_macros.xml</import>
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6 </macros>
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7 <expand macro="fiji_requirements" />
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8 <command>
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9 <![CDATA[
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10 python $__tool_directory__/imagej2_create_image.py
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11 --width $width
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12 --height $height
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13 --depth $depth
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14 --image_type $image_type
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15 --image_title "$image_title"
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16 --jython_script $__tool_directory__/imagej2_create_image_jython_script.py
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17 --output_datatype $output_datatype
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18 --out_fname "$output"
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19 ]]>
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20 </command>
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21 <inputs>
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22 <expand macro="image_type" />
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23 <param name="image_title" type="text" label="Image title" help="Leave blank for no title" />
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24 <param name="width" type="integer" value="512" min="1" label="Image width in pixels" />
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25 <param name="height" type="integer" value="512" min="1" label="Image height in pixels" />
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26 <param name="depth" type="integer" value="1" min="1" label="Image depth" help="Specifies the number of stack slices" />
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27 <param name="output_datatype" type="select" label="Save as format">
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28 <expand macro="image_datatypes" />
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29 </param>
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30 </inputs>
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31 <outputs>
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32 <data name="output" format="jpg">
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33 <actions>
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34 <action type="format">
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35 <option type="from_param" name="output_datatype" />
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36 </action>
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37 </actions>
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38 </data>
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39 </outputs>
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40 <tests>
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41 <test>
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42 <param name="image_type" value="8-bit_ramp" />
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43 <param name="image_title" value="MyTitle" />
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44 <param name="width" value="256" />
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45 <param name="height" value="256" />
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46 <param name="depth" value="1" />
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47 <param name="output_datatype" value="jpg" />
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48 <output name="output" file="create_image1.jpg" ftype="jpg" />
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49 </test>
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50 </tests>
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51 <help>
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52 **What it does**
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53
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54 <![CDATA[
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55 Creates a new image based on the following entries.
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56
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57 - **Type** specifies the image type "8-bit", "16-bit", "32-bit" or "RGB" with options
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58 - **Title** is associated with the image, but not displayed in the image
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59 - **Width** specifies the width of the image in pixels
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60 - **Height** specifies the height of the image in pixels
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61 - **Depth** specifies the number of stack slices
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62 - **Format** specifies the image format "jpg", "png", etc
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63 ]]>
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64
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65 </help>
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66 <expand macro="fiji_headless_citations" />
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67 </tool>