Mercurial > repos > iuc > imagej2_create_image
annotate imagej2_create_image.xml @ 3:bb65623b90a8 draft
planemo upload commit 8f8692e83217a072a3ed928469621f1f606ab28a-dirty
| author | iuc |
|---|---|
| date | Tue, 04 Aug 2015 11:15:10 -0400 |
| parents | ea7a01d0f218 |
| children | 48f25b8408e1 |
| rev | line source |
|---|---|
|
0
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
1 <?xml version='1.0' encoding='UTF-8'?> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
2 <tool id="imagej2_create_image" name="Create new image" version="1.0.0"> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
3 <description>with ImageJ2</description> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
4 <macros> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
5 <import>imagej2_macros.xml</import> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
6 </macros> |
|
3
bb65623b90a8
planemo upload commit 8f8692e83217a072a3ed928469621f1f606ab28a-dirty
iuc
parents:
2
diff
changeset
|
7 <expand macro="fiji_20141125_requirements" /> |
|
0
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
8 <command> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
9 <![CDATA[ |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
10 python $__tool_directory__/imagej2_create_image.py |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
11 --width $width |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
12 --height $height |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
13 --depth $depth |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
14 --image_type $image_type |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
15 --image_title "$image_title" |
|
2
ea7a01d0f218
planemo upload commit 369e40078146d00608d52205bb8cee66ae735b76-dirty
iuc
parents:
0
diff
changeset
|
16 @max_heap_size_args@ |
|
0
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
17 --jython_script $__tool_directory__/jython_script.py |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
18 --output_datatype $output_datatype |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
19 --out_fname "$output" |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
20 ]]> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
21 </command> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
22 <inputs> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
23 <expand macro="image_type" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
24 <param name="image_title" type="text" size="80" label="Image title" help="Leave blank for no title" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
25 <param name="width" type="integer" value="512" min="1" label="Image width in pixels" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
26 <param name="height" type="integer" value="512" min="1" label="Image height in pixels" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
27 <param name="depth" type="integer" value="1" min="1" label="Image depth" help="Specifies the number of stack slices" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
28 <param name="output_datatype" type="select" label="Save as format"> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
29 <expand macro="image_datatypes" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
30 </param> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
31 <expand macro="max_heap_size_type_conditional" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
32 </inputs> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
33 <outputs> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
34 <data name="output" format="jpg"> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
35 <actions> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
36 <action type="format"> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
37 <option type="from_param" name="output_datatype" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
38 </action> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
39 </actions> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
40 </data> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
41 </outputs> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
42 <tests> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
43 <test> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
44 <param name="image_type" value="8-bit_ramp" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
45 <param name="image_title" value="MyTitle" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
46 <param name="width" value="256" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
47 <param name="height" value="256" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
48 <param name="depth" value="1" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
49 <param name="output_datatype" value="jpg" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
50 <output name="output" file="create_image1.jpg" ftype="jpg" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
51 </test> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
52 </tests> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
53 <help> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
54 **What it does** |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
55 |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
56 <![CDATA[ |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
57 Creates a new image based on the following entries. |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
58 |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
59 - **Type** specifies the image type "8-bit", "16-bit", "32-bit" or "RGB" with options |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
60 - **Title** is associated with the image, but not displayed in the image |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
61 - **Width** specifies the width of the image in pixels |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
62 - **Height** specifies the height of the image in pixels |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
63 - **Depth** specifies the number of stack slices |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
64 - **Format** specifies the image format "jpg", "png", etc |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
65 ]]> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
66 |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
67 </help> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
68 <expand macro="fiji_headless_citations" /> |
|
dfe318d97378
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff
changeset
|
69 </tool> |
