annotate imagej2_create_image.xml @ 3:bb65623b90a8 draft

planemo upload commit 8f8692e83217a072a3ed928469621f1f606ab28a-dirty
author iuc
date Tue, 04 Aug 2015 11:15:10 -0400
parents ea7a01d0f218
children 48f25b8408e1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
1 <?xml version='1.0' encoding='UTF-8'?>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
2 <tool id="imagej2_create_image" name="Create new image" version="1.0.0">
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
3 <description>with ImageJ2</description>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
4 <macros>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
5 <import>imagej2_macros.xml</import>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
6 </macros>
3
bb65623b90a8 planemo upload commit 8f8692e83217a072a3ed928469621f1f606ab28a-dirty
iuc
parents: 2
diff changeset
7 <expand macro="fiji_20141125_requirements" />
0
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
8 <command>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
9 <![CDATA[
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
10 python $__tool_directory__/imagej2_create_image.py
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
11 --width $width
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
12 --height $height
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
13 --depth $depth
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
14 --image_type $image_type
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
15 --image_title "$image_title"
2
ea7a01d0f218 planemo upload commit 369e40078146d00608d52205bb8cee66ae735b76-dirty
iuc
parents: 0
diff changeset
16 @max_heap_size_args@
0
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
17 --jython_script $__tool_directory__/jython_script.py
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
18 --output_datatype $output_datatype
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
19 --out_fname "$output"
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
20 ]]>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
21 </command>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
22 <inputs>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
23 <expand macro="image_type" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
24 <param name="image_title" type="text" size="80" label="Image title" help="Leave blank for no title" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
25 <param name="width" type="integer" value="512" min="1" label="Image width in pixels" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
26 <param name="height" type="integer" value="512" min="1" label="Image height in pixels" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
27 <param name="depth" type="integer" value="1" min="1" label="Image depth" help="Specifies the number of stack slices" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
28 <param name="output_datatype" type="select" label="Save as format">
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
29 <expand macro="image_datatypes" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
30 </param>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
31 <expand macro="max_heap_size_type_conditional" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
32 </inputs>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
33 <outputs>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
34 <data name="output" format="jpg">
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
35 <actions>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
36 <action type="format">
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
37 <option type="from_param" name="output_datatype" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
38 </action>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
39 </actions>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
40 </data>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
41 </outputs>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
42 <tests>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
43 <test>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
44 <param name="image_type" value="8-bit_ramp" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
45 <param name="image_title" value="MyTitle" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
46 <param name="width" value="256" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
47 <param name="height" value="256" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
48 <param name="depth" value="1" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
49 <param name="output_datatype" value="jpg" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
50 <output name="output" file="create_image1.jpg" ftype="jpg" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
51 </test>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
52 </tests>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
53 <help>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
54 **What it does**
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
55
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
56 <![CDATA[
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
57 Creates a new image based on the following entries.
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
58
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
59 - **Type** specifies the image type "8-bit", "16-bit", "32-bit" or "RGB" with options
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
60 - **Title** is associated with the image, but not displayed in the image
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
61 - **Width** specifies the width of the image in pixels
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
62 - **Height** specifies the height of the image in pixels
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
63 - **Depth** specifies the number of stack slices
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
64 - **Format** specifies the image format "jpg", "png", etc
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
65 ]]>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
66
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
67 </help>
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
68 <expand macro="fiji_headless_citations" />
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
69 </tool>