Mercurial > repos > iuc > imagej2_create_image

annotate jython_script.py @ 2:ea7a01d0f218 draft

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planemo upload commit 369e40078146d00608d52205bb8cee66ae735b76-dirty
author iuc
date Fri, 26 Jun 2015 05:28:23 -0400
parents dfe318d97378
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dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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1 import sys
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2 from ij import IJ
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dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
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4 # Fiji Jython interpreter implements Python 2.5 which does not
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5 # provide support for argparse.
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6 title = sys.argv[ -6 ]
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7 width = int( sys.argv[ -5 ] )
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8 height = int( sys.argv[ -4 ] )
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9 depth = int( sys.argv[ -3 ] )
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10 type = sys.argv[ -2 ].replace( '_', ' ' )
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11 tmp_image_path = sys.argv[ -1 ]
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12
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13 imp = IJ.newImage( title, type, width, height, depth )
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14 IJ.save( imp, "%s" % tmp_image_path )