view jython_script.py @ 2:ea7a01d0f218 draft

planemo upload commit 369e40078146d00608d52205bb8cee66ae735b76-dirty
author iuc
date Fri, 26 Jun 2015 05:28:23 -0400
parents dfe318d97378
children
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line source

import sys
from ij import IJ

# Fiji Jython interpreter implements Python 2.5 which does not
# provide support for argparse.
title = sys.argv[ -6 ]
width = int( sys.argv[ -5 ] )
height = int( sys.argv[ -4 ] )
depth = int( sys.argv[ -3 ] )
type = sys.argv[ -2 ].replace( '_', ' ' )
tmp_image_path = sys.argv[ -1 ]

imp = IJ.newImage( title, type, width, height, depth )
IJ.save( imp, "%s" % tmp_image_path )