Mercurial > repos > iuc > imagej2_create_image

annotate jython_script.py @ 0:dfe318d97378 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
author iuc
date Tue, 09 Jun 2015 12:22:03 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
1 import sys
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
2 from ij import IJ
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
3
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
4 # Fiji Jython interpreter implements Python 2.5 which does not
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
5 # provide support for argparse.
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
6 title = sys.argv[ -6 ]
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
7 width = int( sys.argv[ -5 ] )
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
8 height = int( sys.argv[ -4 ] )
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
9 depth = int( sys.argv[ -3 ] )
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
10 type = sys.argv[ -2 ].replace( '_', ' ' )
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
11 tmp_image_path = sys.argv[ -1 ]
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
12
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
13 imp = IJ.newImage( title, type, width, height, depth )
dfe318d97378 planemo upload commit 4bf97847c35c4dcf9638008b9b4b6c4e10015f19
iuc
parents:
diff changeset
14 IJ.save( imp, "%s" % tmp_image_path )